RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 PRKCIP41743 596 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 STAT1P42224 750 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 GCLMP48507 274 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 TNNC1P63316 161 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ZNF252P-AS1Q0IIN9 211 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ASIC2Q16515 512 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 WDR72Q3MJ13 1102 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ZACNQ401N2 412 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 SH3PXD2AQ5TCZ1 1133 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 RAD9BQ6WBX8 426 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ETFBKMTQ8IXQ9 262 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 TXNDC5Q8NBS9 432 aaKnown RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 PDZD8Q8NEN9 1154 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 OVCA2Q8WZ82 227 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 JAKMIP2Q96AA8 810 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 CCDC127Q96BQ5 260 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 PPP1R13BQ96KQ4 1090 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 CCDC42Q96M95 316 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 EIF3CQ99613 913 aaKnown RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 TMEM121BQ9BXQ6 578 aaPredicted RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 NLRC4Q9NPP4 1024 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 LUC7LQ9NQ29 371 aaKnown RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 IL37Q9NZH6 218 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 TBC1D14Q9P2M4 693 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 FHOD1Q9Y613 1164 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 EPN1Q9Y6I3 576 aaPredicted RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 PCDH15Q96QU1 1955 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ZFYVE26Q68DK2 2539 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.72□□□□□ -0.05
LDLR-213ENST00000560502 TNFRSF10BO14763 440 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 COCHO43405 550 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 RTN3O95197 1032 aaPredicted RBP14.72□□□□□ -0.05
LDLR-213ENST00000560502 LCA5LO95447 670 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 ABL1P00519 1130 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 ATICP31939 592 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 TIE1P35590 1138 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 GRIA2P42262 883 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 DHPSP49366 369 aaPredicted RBP14.72□□□□□ -0.05
LDLR-213ENST00000560502 MYL6P60660 151 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 IRX4P78413 519 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 KDSRQ06136 332 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 RAPGEF1Q13905 1077 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 MAP7D1Q3KQU3 841 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 EOGTQ5NDL2 527 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 LY6G5CQ5SRR4 150 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 EMC10Q5UCC4 262 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 SNX30Q5VWJ9 437 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 NYAP1Q6ZVC0 841 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 PAQR9Q6ZVX9 377 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 SV2AQ7L0J3 742 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 NUP93Q8N1F7 819 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 WHAMMQ8TF30 809 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 RLN3Q8WXF3 142 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 PIGKQ92643 395 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 OTUB2Q96DC9 234 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 NT5C1BQ96P26 610 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 DEF6Q9H4E7 631 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 VRTNQ9H8Y1 702 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 NHEJ1Q9H9Q4 299 aaPredicted RBP14.72□□□□□ -0.05
LDLR-213ENST00000560502 ARHGEF4Q9NR80 690 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 RAB20Q9NX57 234 aa14.72□□□□□ -0.05
LDLR-213ENST00000560502 MBD1Q9UIS9 605 aaPredicted RBP14.72□□□□□ -0.05
LDLR-213ENST00000560502 PKD1L2Q7Z442 2459 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 ADAMTS9Q9P2N4 1935 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 FAM92AA1XBS5 289 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 A8MXQ7 604 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 F8VZ95 297 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 HOXC11O43248 304 aaPredicted RBP14.71□□□□□ -0.05
LDLR-213ENST00000560502 ZDHHC11BP0C7U3 371 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 CEACAM1P13688 526 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 SOX5P35711 763 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 PTGER3P43115 390 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 TNFRSF4P43489 277 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 TUBP50607 506 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 MFAP3P55082 362 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 GCNT1Q02742 428 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 IFRD2Q12894 506 aaPredicted RBP14.71□□□□□ -0.05
LDLR-213ENST00000560502 SPA17Q15506 151 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 PEAR1Q5VY43 1037 aaPredicted RBP14.71□□□□□ -0.05
LDLR-213ENST00000560502 TOGARAM2Q6ZUX3 1019 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 LPCAT2Q7L5N7 544 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 FAM35AQ86V20 835 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 VPS36Q86VN1 386 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 TTC30AQ86WT1 665 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 FRMD1Q8N878 549 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 FBXO32Q969P5 355 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 FAXDC2Q96IV6 333 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 SPACA7Q96KW9 195 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 KCNK16Q96T55 309 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 CHP1Q99653 195 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 SMYD3Q9H7B4 428 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 POLMQ9NP87 494 aaPredicted RBP14.71□□□□□ -0.05
LDLR-213ENST00000560502 ARHGAP20Q9P2F6 1191 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 DNAJC12Q9UKB3 198 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 AKAP13Q12802 2813 aa14.71□□□□□ -0.05
LDLR-213ENST00000560502 CACNA1GO43497 2377 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 C1QTNF9BB2RNN3 333 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 C4BPAP04003 597 aaKnown RBP14.7□□□□□ -0.06
LDLR-213ENST00000560502 C1QTNF9P0C862 333 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 SLC5A3P53794 718 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms