RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MTMR10Q9NXD2 777 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 TRPM5Q9NZQ8 1165 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 EFR3BQ9Y2G0 817 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 PLXNA3P51805 1871 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 CHD9Q3L8U1 2897 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 I6L893 689 aaPredicted RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 MSI1O43347 362 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 TLR5O60602 858 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 CLASP2O75122 1294 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 TBX18O95935 607 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 IL4RP24394 825 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 PPP3CCP48454 512 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 SCAPQ12770 1279 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 EFEMP1Q12805 493 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 MMRN1Q13201 1228 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 PPP6R3Q5H9R7 873 aaPredicted RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 C10orf120Q5SQS8 335 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 FBXO38Q6PIJ6 1188 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 VSIG1Q86XK7 387 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 TDHQ8IZJ6 230 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 PYROXD2Q8N2H3 581 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 ZNF276Q8N554 614 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 KCTD15Q96SI1 283 aaPredicted RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 CDK5RAP1Q96SZ6 601 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 ZNF670Q9BS34 389 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 MAK16Q9BXY0 300 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 TKTL2Q9H0I9 626 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 DDX47Q9H0S4 455 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 CCSER2Q9H7U1 834 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 ANLNQ9NQW6 1124 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 CWC15Q9P013 229 aaKnown RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 UXTQ9UBK9 157 aaPredicted RBP11.65□□□□□ -0.55
USP3-218ENST00000560202 TLR6Q9Y2C9 796 aa11.65□□□□□ -0.55
USP3-218ENST00000560202 ZNF487B1APH4 448 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 PHF2O75151 1096 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 CCR1P32246 355 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 PPP2R5DQ14738 602 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 CYP1B1Q16678 543 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 BRMS1LQ5PSV4 323 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 BBS12Q6ZW61 710 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 RTL10Q7L3V2 364 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 TADA2BQ86TJ2 420 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 RFX6Q8HWS3 928 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 C1orf54Q8WWF1 131 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 SLC39A13Q96H72 371 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 RNF157Q96PX1 679 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 LRRC1Q9BTT6 524 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 LMAN2LQ9H0V9 348 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 PLEKHA4Q9H4M7 779 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 ZNF334Q9HCZ1 680 aaPredicted RBP11.64□□□□□ -0.55
USP3-218ENST00000560202 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP3-218ENST00000560202 ARHGEF38Q9NXL2 777 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 MARCH2Q9P0N8 246 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 RASAL2Q9UJF2 1139 aa11.64□□□□□ -0.55
USP3-218ENST00000560202 PER2O15055 1255 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 CST8O60676 142 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 F11P03951 625 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 RHOXF2BP0C7M4 288 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 EPCAMP16422 314 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 CHRNA3P32297 505 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 ATP5C1P36542 298 aaKnown RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 ARL4AP40617 200 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 TBX4P57082 545 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 DYNLT1P63172 113 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 NNTQ13423 1086 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 TFDP2Q14188 446 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 TRIP4Q15650 581 aaPredicted RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 ELF2Q15723 593 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 ANKRD20A8PQ5CZ79 823 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 PPM1LQ5SGD2 360 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 HECTD3Q5T447 861 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 CCDC70Q6NSX1 233 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 C8orf74Q6P047 294 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 MIB1Q86YT6 1006 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 ELMOD1Q8N336 334 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 C12orf50Q8NA57 414 aaPredicted RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 SLC22A17Q8WUG5 538 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 MAGOHBQ96A72 148 aaKnown RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 FAF2Q96CS3 445 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 RHOXF2Q9BQY4 288 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 EPC1Q9H2F5 836 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 SLITRK6Q9H5Y7 841 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 LRRC19Q9H756 370 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 YY1AP1Q9H869 796 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 IL21Q9HBE4 155 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 MAN1C1Q9NR34 630 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 HOMER3Q9NSC5 361 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 RCOR3Q9P2K3 495 aaPredicted RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 R3HDM2Q9Y2K5 976 aaKnown RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 RANBP2P49792 3224 aaKnown RBP11.63□□□□□ -0.55
USP3-218ENST00000560202 CHD7Q9P2D1 2997 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 GBF1Q92538 1859 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 MYO16Q9Y6X6 1858 aa11.63□□□□□ -0.55
USP3-218ENST00000560202 SLC12A8A0AV02 714 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 KCNU1A8MYU2 1149 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 H3BRJ5 948 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 CCL16O15467 120 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 ZMYND10O75800 440 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 SLC2A3P11169 496 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms