RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 CCL16O15467 120 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 RFPL2O75678 378 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 HNRNPA1P09651 372 aaKnown RBP eCLIP12.66□□□□□ -0.38
HERC1-205ENST00000559886 L1CAMP32004 1257 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 PPP2R5DQ14738 602 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 LLGL1Q15334 1064 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 ARL13BQ3SXY8 428 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 BRMS1LQ5PSV4 323 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 MAP7D3Q8IWC1 876 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 SLC39A13Q96H72 371 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 HERPUD2Q9BSE4 406 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 DHX35Q9H5Z1 703 aaKnown RBP12.66□□□□□ -0.38
HERC1-205ENST00000559886 PCDH18Q9HCL0 1135 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 ANLNQ9NQW6 1124 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 MTMR10Q9NXD2 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 ARHGEF38Q9NXL2 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 hCG_1818297A0A087WSY0 165 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 TCRBV7S2A1N4TA0A589 114 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 CCR1P32246 355 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 ATP5C1P36542 298 aaKnown RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 KLF1Q13351 362 aaPredicted RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 DPYSL3Q14195 570 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 KRT81Q14533 505 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 GAREM2Q75VX8 874 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 HS6ST3Q8IZP7 471 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 RNF34Q969K3 372 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 HEMGNQ9BXL5 484 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 CALN1Q9BXU9 219 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 MAGEB5Q9BZ81 275 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 TKTL2Q9H0I9 626 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 TMPRSS4Q9NRS4 437 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 ZDHHC7Q9NXF8 308 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 DNMT3LQ9UJW3 386 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 KCNU1A8MYU2 1149 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 ZNF487B1APH4 448 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 KRIT1O00522 736 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 COCHO43405 550 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 OAS1P00973 400 aaKnown RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 KRT10P13645 584 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 IL4RP24394 825 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 NRIP1P48552 1158 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 KCNC3Q14003 757 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 TRIP4Q15650 581 aaPredicted RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 LRIT3Q3SXY7 679 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 EFHC2Q5JST6 749 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 ELMSAN1Q6PJG2 1045 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 ZDHHC14Q8IZN3 488 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 TSC1Q92574 1164 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 FCRL2Q96LA5 508 aaPredicted RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 CDCA3Q99618 268 aaPredicted RBP12.65□□□□□ -0.38
HERC1-205ENST00000559886 AP1M1Q9BXS5 423 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.65□□□□□ -0.38
HERC1-205ENST00000559886 RASAL2Q9UJF2 1139 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 NR2E1Q9Y466 385 aa12.65□□□□□ -0.38
HERC1-205ENST00000559886 A0A1W2PPC1 479 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 IGLV3-27P01718 113 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 POU2F2P09086 479 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 SLC2A3P11169 496 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 GABRR2P28476 465 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 KPNA1P52294 538 aaPredicted RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 EPHA5P54756 1037 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 TBX4P57082 545 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 RING1Q06587 406 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 MMRN1Q13201 1228 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 SIX1Q15475 284 aaPredicted RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 PPP6R3Q5H9R7 873 aaPredicted RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 ADAT2Q7Z6V5 191 aaKnown RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 MIB1Q86YT6 1006 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 PYROXD2Q8N2H3 581 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 MAIP1Q8WWC4 291 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 KCTD15Q96SI1 283 aaPredicted RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 CORO1BQ9BR76 489 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 ZNF670Q9BS34 389 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 ZNF576Q9H609 170 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 ASAH2Q9NR71 780 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 RBM12Q9NTZ6 932 aaKnown RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 C2orf78A6NCI8 922 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 XYLBO75191 536 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 TJP3O95049 919 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 PAPLNO95428 1278 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 PTPN2P17706 415 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 CDC25CP30307 473 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 ADCY2Q08462 1091 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 KAZNQ674X7 775 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 MYRIPQ8NFW9 859 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 FAF2Q96CS3 445 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 HAPLN3Q96S86 360 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 PRKD2Q9BZL6 878 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 HCFC1R1Q9NWW0 138 aa12.64□□□□□ -0.39
HERC1-205ENST00000559886 RCOR3Q9P2K3 495 aaPredicted RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 HBS1LQ9Y450 684 aaKnown RBP12.64□□□□□ -0.39
HERC1-205ENST00000559886 SLC12A8A0AV02 714 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 EFCAB8A8MWE9 144 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 CCDC188H7C350 402 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 RBM10P98175 930 aaKnown RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 MLLT1Q03111 559 aaPredicted RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 C2orf54Q08AI8 447 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 SEMA3BQ13214 749 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 ANKRD20A8PQ5CZ79 823 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 PPP2R3CQ969Q6 453 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms