RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 C17orf75Q9HAS0 396 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 CYP4F12Q9HCS2 524 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 STK32BQ9NY57 414 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 SUN2Q9UH99 717 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 DRG1Q9Y295 367 aaKnown RBP7.32□□□□□ -1.24
USP3-210ENST00000559192 CSADQ9Y600 493 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 RGPD5Q99666 1765 aa7.32□□□□□ -1.24
USP3-210ENST00000559192 LSM1O15116 133 aaKnown RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 MICAL2O94851 1124 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ITPRIPL1Q6GPH6 555 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 HACE1Q8IYU2 909 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 TMEM161BQ8NDZ6 487 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 SYTL5Q8TDW5 730 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 EZH1Q92800 747 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 HPDLQ96IR7 371 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 WNK4Q96J92 1243 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 VCPIP1Q96JH7 1222 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 BEGAINQ9BUH8 593 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PIDD1Q9HB75 910 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ACSS2Q9NR19 701 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ETNK2Q9NVF9 386 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 BTBD7Q9P203 1132 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PLA2G4CQ9UP65 541 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 GMEB1Q9Y692 573 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 GOLGA8TH3BQL2 631 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 HIRAP54198 1017 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 C15orf59Q2T9L4 293 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 PPHLN1Q8NEY8 458 aaKnown RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 ZFRQ96KR1 1074 aaKnown RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 MBOAT7Q96N66 472 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 NT5C1AQ9BXI3 368 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ZNF518BQ9C0D4 1074 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 VPS33BQ9H267 617 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 KLHL31Q9H511 634 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 COG4Q9H9E3 785 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 EFCAB1Q9HAE3 211 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 S100A14Q9HCY8 104 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PNPOQ9NVS9 261 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 WRAP73Q9P2S5 460 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 TMX2Q9Y320 296 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 SCN11AQ9UI33 1791 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 APOC4-APOC2K7ER74 178 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CYB561D2O14569 222 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CSPG5O95196 566 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 APOC2P02655 101 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ERVK-10P10266 1014 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 MPP2Q14168 576 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PCSK7Q16549 785 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 DCAF6Q58WW2 860 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ARMCX2Q7L311 632 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CATSPER4Q7RTX7 472 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PTAR1Q7Z6K3 402 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 CLVS1Q8IUQ0 354 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 WDR49Q8IV35 697 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 COLGALT1Q8NBJ5 622 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 SYT15Q9BQS2 421 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 NACA2Q9H009 215 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ZNF408Q9H9D4 720 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PLEKHA5Q9HAU0 1116 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 RABGEF1Q9UJ41 708 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 SNED1Q8TER0 1413 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ZNF142P52746 1687 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 CHEK2O96017 543 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 SERPINA6P08185 405 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 COX4I1P13073 169 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 UQCRBP14927 111 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 VAV1P15498 845 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 RAB27AP51159 221 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 NEK3P51956 506 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 GDF10P55107 478 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 DGKDQ16760 1214 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CIAPIN1Q6FI81 312 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 MON1BQ7L1V2 547 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ACOT1Q86TX2 421 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 HPS6Q86YV9 775 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 WDR60Q8WVS4 1066 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 MCRS1Q96EZ8 462 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CPB2Q96IY4 423 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 FRMD8Q9BZ67 464 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 FAM198AQ9UFP1 575 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 RPL26L1Q9UNX3 145 aaKnown RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 C15orf38-AP3S2A0A0A6YYH1 394 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 MOCS2O96007 188 aaPredicted RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 RGS2P41220 211 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 NAMPTP43490 491 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 AQP4P55087 323 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 TRIM25Q14258 630 aaKnown RBP7.31□□□□□ -1.24
USP3-210ENST00000559192 RALGPS1Q5JS13 557 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PLEKHM3Q6ZWE6 761 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 KRT27Q7Z3Y8 459 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ARPINQ7Z6K5 226 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 CLEC4FQ8N1N0 589 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 OR6P1Q8NGX9 317 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 NAT14Q8WUY8 206 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 TUBGCP5Q96RT8 1024 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 UBP1Q9NZI7 540 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 ATXN10Q9UBB4 475 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 PRKAG3Q9UGI9 489 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 STAP1Q9ULZ2 295 aa7.31□□□□□ -1.24
USP3-210ENST00000559192 BCL9LQ86UU0 1499 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms