RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CAND1Q86VP6 1230 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 OR4N4Q8N0Y3 316 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SYNE4Q8N205 404 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 B3GALNT2Q8NCR0 500 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 BEND2Q8NDZ0 799 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TOR1AIP2Q8NFQ8 470 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 LINS1Q8NG48 757 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 OR6Y1Q8NGX8 325 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ABHD5Q8WTS1 349 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 XAGE5Q8WWM1 108 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ASB10Q8WXI3 467 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ZDHHC12Q96GR4 267 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 BOD1Q96IK1 185 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 OSBPL9Q96SU4 736 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SENP7Q9BQF6 1050 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SLC26A6Q9BXS9 759 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 AGXT2Q9BYV1 514 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 GPR63Q9BZJ6 419 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TWSG1Q9GZX9 223 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 BRD8Q9H0E9 1235 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TMX4Q9H1E5 349 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 ABHD16BQ9H3Z7 469 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 GLOD4Q9HC38 313 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 GALNT9Q9HCQ5 603 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 UBN1Q9NPG3 1134 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 WASH6PQ9NQA3 447 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 G6PC2Q9NQR9 355 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TLR8Q9NR97 1041 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 INTS13Q9NVM9 706 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TMEM160Q9NX00 188 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ANKFY1Q9P2R3 1169 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 DKK2Q9UBU2 259 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TRPC5Q9UL62 973 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 C19orf53Q9UNZ5 99 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 DNAJC16Q9Y2G8 782 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 PCDHB2Q9Y5E7 798 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 COX11Q9Y6N1 276 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ADGRA2Q96PE1 1338 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 GXYLT2A0PJZ3 443 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 AP4M1O00189 453 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 KLK10O43240 276 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 HOXC11O43248 304 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 CTIFO43310 598 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 CENPBP07199 599 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 IL6RP08887 468 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 IFIT1P09914 478 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 TMEM225BP0DP42 221 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 ITGAMP11215 1152 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 LYL1P12980 280 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CPA1P15085 419 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CAPN3P20807 821 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 FPR3P25089 353 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CTGFP29279 349 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 PTH2RP49190 550 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 PAPOLAP51003 745 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 RBM5P52756 815 aaKnown RBP eCLIP1.86□□□□□ -2.11
USP3-209ENST00000558925 EIF4A1P60842 406 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 PSG6Q00889 435 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 E2F1Q01094 437 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 UBE3AQ05086 875 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CHRNDQ07001 517 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 GALNT2Q10471 571 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CSHL1Q14406 222 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 TBCCQ15814 346 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 SPDYE7PQ495Y7 208 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 FAM90A2PQ658T7 463 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 SP5Q6BEB4 398 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 SFRP4Q6FHJ7 346 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 CCDC144NLQ6NUI1 221 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 BBS12Q6ZW61 710 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 RSRC2Q7L4I2 434 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 KRT27Q7Z3Y8 459 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 RD3Q7Z3Z2 195 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 P3H2Q8IVL5 708 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 NRSN1Q8IZ57 195 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 NME8Q8N427 588 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 GALNT4Q8N4A0 578 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 ZNF276Q8N554 614 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 PCYOX1LQ8NBM8 494 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CLEC4CQ8WTT0 213 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 SCARB1Q8WTV0 552 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 SOCS4Q8WXH5 440 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 TFAP2BQ92481 460 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 NPIPB3Q92617 1050 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 STAMQ92783 540 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 HAS1Q92839 578 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 ZUFSPQ96AP4 578 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 FKBP10Q96AY3 582 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CTHRC1Q96CG8 243 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 HVCN1Q96D96 273 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 PTCD3Q96EY7 689 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 ZNF668Q96K58 619 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 PRR25Q96S07 402 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 CENPOQ9BU64 300 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 DPCDQ9BVM2 203 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 TTYH1Q9H313 450 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 CCDC134Q9H6E4 229 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 SAP30LQ9HAJ7 183 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 PLEKHA2Q9HB19 425 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 IL21RQ9HBE5 538 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms