RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PLEKHH3Q7Z736 793 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 PXKQ7Z7A4 578 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 MAPKAPK5Q8IW41 473 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 DIS3L2Q8IYB7 885 aaKnown RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 IZUMO1Q8IYV9 350 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 LINC01356Q8N9X3 169 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 SUPT20HQ8NEM7 779 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 METTL6Q8TCB7 284 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 SLC2A12Q8TD20 617 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 SNX19Q92543 992 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 NPIPB3Q92617 1050 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 CUL5Q93034 780 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 FAM136AQ96C01 138 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 PIGSQ96S52 555 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 MPHOSPH9Q99550 1183 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 TEX101Q9BY14 249 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 ITPAQ9BY32 194 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 TTYH1Q9H313 450 aaPredicted RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 MROH8Q9H579 483 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 BRF2Q9HAW0 419 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 PARD6AQ9NPB6 346 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 EIF2B3Q9NR50 452 aaKnown RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 TLR8Q9NR97 1041 aaKnown RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 FBXO28Q9NVF7 368 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 ZDHHC7Q9NXF8 308 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 STEAP1Q9UHE8 339 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 NOL7Q9UMY1 257 aaKnown RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 GDAQ9Y2T3 454 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 UBE2J1Q9Y385 318 aaPredicted RBP3.47□□□□□ -1.85
TRAV28-201ENST00000557548 PIAS3Q9Y6X2 628 aa3.47□□□□□ -1.85
TRAV28-201ENST00000557548 RSF1Q96T23 1441 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3DA0A087WVF3 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3IA0A087WXS9 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3EA0A087X179 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3KA0A087X1G2 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 A0A1W2PS29 197 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MYADML2A6NDP7 307 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3BA6NDS4 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3FA6NER0 549 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MBD3L5A6NJ08 208 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ZAR1LA6NP61 321 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3LB9A6J9 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 GTPBP1O00178 669 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PPM1DO15297 605 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 AKAP8O43823 692 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 NOBOXO60393 691 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 GUCY1B2O75343 617 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 DNTTP04053 509 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 CLEC3BP05452 202 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ELANEP08246 267 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3HP0C7X1 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PRKCHP24723 683 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 EPHA8P29322 1005 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 COPB2P35606 906 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ARL3P36405 182 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MLH1P40692 756 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PNPLA4P41247 253 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 RPS7P62081 194 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 RBM6P78332 1123 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 SEMA3BQ13214 749 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MPP3Q13368 585 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 DCTN2Q13561 401 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 HLXQ14774 488 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PRICKLE4Q2TBC4 344 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 NRN1LQ496H8 165 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 AASDHQ4L235 1098 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ZNF385BQ569K4 471 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 RILPL1Q5EBL4 403 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 C1QTNF12Q5T7M4 302 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 NAA35Q5VZE5 725 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 FAM90A2PQ658T7 463 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3GQ6DHY5 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3CQ6IPX1 549 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 GRHL2Q6ISB3 625 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 LRRC55Q6ZSA7 311 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 P3H2Q8IVL5 708 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TBC1D3Q8IZP1 549 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 CNTROBQ8N137 903 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 FAM109AQ8N4B1 249 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PTGR2Q8N8N7 351 aaPredicted RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 LSM14AQ8ND56 463 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 NFKBIDQ8NI38 313 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ARRDC3Q96B67 414 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MIEF2Q96C03 454 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ELP4Q96EB1 424 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 RNF31Q96EP0 1072 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 WDYHV1Q96HA8 205 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PPP1R10Q96QC0 940 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 OSBPL9Q96SU4 736 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 MPHOSPH8Q99549 860 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 ACTRT3Q9BYD9 372 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 CLPBQ9H078 707 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TAOK3Q9H2K8 898 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 SERHL2Q9H4I8 314 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 NRDE2Q9H7Z3 1164 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 VEZTQ9HBM0 779 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 PLSCR4Q9NRQ2 329 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 SEPT11Q9NVA2 429 aaKnown RBP3.46□□□□□ -1.86
TRAV28-201ENST00000557548 TAS2R10Q9NYW0 307 aa3.46□□□□□ -1.86
TRAV28-201ENST00000557548 EIF2B4Q9UI10 523 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms