RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TBX4P57082 545 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 CDO1Q16878 200 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ZC3H12AQ5D1E8 599 aaKnown RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 DAB2IPQ5VWQ8 1189 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 PLCD3Q8N3E9 789 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ZNF564Q8TBZ8 553 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ASIC4Q96FT7 647 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ZFYVE19Q96K21 471 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 SERPINB11Q96P15 392 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 CNPY3Q9BT09 278 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 LINC00597Q9H2U6 94 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 MRPL47Q9HD33 250 aaKnown RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 TMPRSS4Q9NRS4 437 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 PRKAG3Q9UGI9 489 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ANAPC7Q9UJX3 599 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 STAP1Q9ULZ2 295 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 TLR6Q9Y2C9 796 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 HBS1LQ9Y450 684 aaKnown RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 UNC80Q8N2C7 3258 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 IPO7O95373 1038 aaKnown RBP13.34□□□□□ -0.27
SHMT2-227ENST00000557269 TCF3P15923 654 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 PSMA2P25787 234 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 CXCR3P49682 368 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 KRT83P78385 493 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 COG7P83436 770 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 DEUP1Q05D60 604 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 TCEAL1Q15170 157 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 Q6ZNB5 142 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 HTR3DQ70Z44 454 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 MTSS1LQ765P7 747 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 BBS7Q8IWZ6 715 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 SLC44A3Q8N4M1 653 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 BPIFB1Q8TDL5 484 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 FAM172AQ8WUF8 416 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 RFFLQ8WZ73 363 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 PLD4Q96BZ4 506 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 PGAP3Q96FM1 320 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-227ENST00000557269 KIF9Q9HAQ2 790 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 OBP2AQ9NY56 170 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 RRN3Q9NYV6 651 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 UVRAGQ9P2Y5 699 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 XPO7Q9UIA9 1087 aaKnown RBP13.34□□□□□ -0.27
SHMT2-227ENST00000557269 AGO1Q9UL18 857 aaKnown RBP13.34□□□□□ -0.27
SHMT2-227ENST00000557269 WNT6Q9Y6F9 365 aa13.34□□□□□ -0.27
SHMT2-227ENST00000557269 E2F8A0AVK6 867 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 KCNU1A8MYU2 1149 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 PJA2O43164 708 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 MTA2O94776 668 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 TCF4P15884 667 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 CORO1AP31146 461 aaKnown RBP13.33□□□□□ -0.28
SHMT2-227ENST00000557269 GBP1P32455 592 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 RDXP35241 583 aaKnown RBP13.33□□□□□ -0.28
SHMT2-227ENST00000557269 ARHGAP25P42331 645 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 FCHO2Q0JRZ9 810 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 NNTQ13423 1086 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 TRIM68Q6AZZ1 485 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 NADSYN1Q6IA69 706 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 KIAA1328Q86T90 577 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 FAM131BQ86XD5 332 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 DENND1CQ8IV53 801 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 MFSD6LQ8IWD5 586 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 FNIP1Q8TF40 1166 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 P2RY11Q96G91 374 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 MAGEB5Q9BZ81 275 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 PYCARDQ9ULZ3 195 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 SH3BP1Q9Y3L3 701 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 SNX10Q9Y5X0 201 aa13.33□□□□□ -0.28
SHMT2-227ENST00000557269 GOLGA6L7A0A1B0GV03 622 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 TMEM110-MUSTN1A8MSY1 372 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 BUB1O43683 1085 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 NARSO43776 548 aaKnown RBP13.32□□□□□ -0.28
SHMT2-227ENST00000557269 ARSAP15289 507 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 PSMC3P17980 439 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 KPNA1P52294 538 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-227ENST00000557269 RING1Q06587 406 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 TNK2Q07912 1038 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 STRADAQ7RTN6 431 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 DDX42Q86XP3 938 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-227ENST00000557269 RHOT2Q8IXI1 618 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 CCDC185Q8N715 623 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 E2F7Q96AV8 911 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 MYEOVQ96EZ4 313 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 PEBP4Q96S96 227 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 FAM83CQ9BQN1 747 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 TRMT61BQ9BVS5 477 aaKnown RBP13.32□□□□□ -0.28
SHMT2-227ENST00000557269 GOLPH3Q9H4A6 298 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 WDCPQ9H6R7 721 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 LUC7LQ9NQ29 371 aaKnown RBP13.32□□□□□ -0.28
SHMT2-227ENST00000557269 ARHGEF38Q9NXL2 777 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 IGSF9Q9P2J2 1179 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 IP6K2Q9UHH9 426 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 PAXBP1Q9Y5B6 917 aa13.32□□□□□ -0.28
SHMT2-227ENST00000557269 A0A0A6YYK5 440 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 OTOL1A6NHN0 477 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 BTNL10A8MVZ5 291 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 MYO1FO00160 1098 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 ARNTLO00327 626 aa13.31□□□□□ -0.28
SHMT2-227ENST00000557269 TRDMT1O14717 391 aaKnown RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 BUB1BO60566 1050 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-227ENST00000557269 LRCH4O75427 683 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms