RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 TPM3P06753 285 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 UNGP13051 313 aaPredicted RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 TYRP14679 529 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 GBP1P32455 592 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 NOS2P35228 1153 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 SCNN1AP37088 669 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 PBX1P40424 430 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 TNFRSF4P43489 277 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 CXCL12P48061 93 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 SLC11A2P49281 568 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 CCR3P51677 355 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 ZNF445P59923 1031 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 CDK17Q00537 523 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 EIF4EBP2Q13542 120 aaPredicted RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 GAS6Q14393 721 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 PPP2R5DQ14738 602 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 ZNF528Q3MIS6 628 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 DCAF6Q58WW2 860 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 NAA35Q5VZE5 725 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 NAIF1Q69YI7 327 aaPredicted RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 XYLT1Q86Y38 959 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 ETFBKMTQ8IXQ9 262 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 MAML2Q8IZL2 1156 aaPredicted RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 DEFB106AQ8N104 65 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 NAT16Q8N8M0 369 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 DQX1Q8TE96 717 aaKnown RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 IQCDQ96DY2 449 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 PIWIL1Q96J94 861 aaKnown RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 IRX2Q9BZI1 471 aaPredicted RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 NUCKS1Q9H1E3 243 aaKnown RBP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 TMEM51Q9NW97 253 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.13□□□□□ -0.63
LINC00239-201ENST00000556973 RRN3Q9NYV6 651 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 AIPL1Q9NZN9 384 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 IFNKQ9P0W0 207 aa11.13□□□□□ -0.63
LINC00239-201ENST00000556973 A0A1W2PQJ5 194 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 LRRC53A6NM62 1247 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 CHURC1-FNTBB4DL54 471 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 K7EQS6 105 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 IRAK2O43187 625 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 CACNG3O60359 315 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 TULP3O75386 442 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 GRAP2O75791 330 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 KAT7O95251 611 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 TRUB2O95900 331 aaKnown RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 PENKP01210 267 aaPredicted RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 IGLV3-25P01717 112 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 SP9P0CG40 484 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 MMP8P22894 467 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 GRIA2P42262 883 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 MATKP42679 507 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 MRPS21P82921 87 aaKnown RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 MTA1Q13330 715 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 MPPE1Q53F39 396 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 SFMBT2Q5VUG0 894 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 FYB2Q5VWT5 728 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 Q6ZS52 159 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 ARCQ7LC44 396 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 TAC4Q86UU9 113 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 C12orf40Q86WS4 652 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 ADAM32Q8TC27 787 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 DDI1Q8WTU0 396 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 ATOH1Q92858 354 aaPredicted RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 SLC39A13Q96H72 371 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 FCRL2Q96LA5 508 aaPredicted RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 PCDHB18PQ96TA0 734 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 DDX50Q9BQ39 737 aaKnown RBP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 TTYH3Q9C0H2 523 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 ARHGEF4Q9NR80 690 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.12□□□□□ -0.63
LINC00239-201ENST00000556973 SLC12A6Q9UHW9 1150 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 FBXO10Q9UK96 956 aa11.12□□□□□ -0.63
LINC00239-201ENST00000556973 TBC1D3BA6NDS4 549 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CBFA2T2O43439 604 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 ACSL4O60488 711 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 RNF40O75150 1001 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 DAB1O75553 588 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 PAPSS2O95340 614 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 F9P00740 461 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 SLC2A3P11169 496 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 TNFAIP3P21580 790 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CCR1P32246 355 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 NSFP46459 744 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 DGKGP49619 791 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 NRLP54845 237 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 RNASE9P60153 205 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 NHLH1Q02575 133 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CENPCQ03188 943 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CSTF1Q05048 431 aaKnown RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 ASIC2Q16515 512 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 CLEC16AQ2KHT3 1053 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 FAM102AQ5T9C2 384 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 PPP1R2P3Q6NXS1 205 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 PHF13Q86YI8 300 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 PHTF2Q8N3S3 785 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 ATP6V0D2Q8N8Y2 350 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 SLC30A5Q8TAD4 765 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 KCNV2Q8TDN2 545 aa11.11□□□□□ -0.63
LINC00239-201ENST00000556973 EZH1Q92800 747 aaPredicted RBP11.11□□□□□ -0.63
LINC00239-201ENST00000556973 NT5C3BQ969T7 300 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms