RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TMEM26Q6ZUK4 368 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SLC13A5Q86YT5 568 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 ZC3H7AQ8IWR0 971 aaKnown RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 FAM109AQ8N4B1 249 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 AFAP1L2Q8N4X5 818 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 FBXL6Q8N531 539 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 FIBCD1Q8N539 461 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PAF1Q8N7H5 531 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 RASGRP4Q8TDF6 673 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 TCP10LQ8TDR4 215 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SH3YL1Q96HL8 342 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 RMDN3Q96TC7 470 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 MTMR12Q9C0I1 747 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 KCNN2Q9H2S1 579 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PPCSQ9HAB8 311 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 GSTTP1A0A1W2PQM5 241 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 TCRBV7S2A1N4TA0A589 114 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 NOL3O60936 208 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 PRDM1O75626 825 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 MTA2O94776 668 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 IGKV5-2P06315 115 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SERPINA6P08185 405 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ICAM2P13598 275 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CCNA2P20248 432 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SERPINB1P30740 379 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 TIMM10P62072 90 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CETN1Q12798 172 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CDC20Q12834 499 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 PTK6Q13882 451 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SELPLGQ14242 412 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CCNJQ5T5M9 372 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ZFP1Q6P2D0 407 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ZNF600Q6ZNG1 722 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 HPS6Q86YV9 775 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 FIG4Q92562 907 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 UROC1Q96N76 676 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 MTMR9Q96QG7 549 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 LPIN3Q9BQK8 851 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 OSBPL11Q9BXB4 747 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SLC4A5Q9BY07 1137 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 WDR12Q9GZL7 423 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SLC52A2Q9HAB3 445 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 EIF3LQ9Y262 564 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 PABPN1LA6NDY0 278 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 VWA5AO00534 786 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 HDAC3O15379 428 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 PLS3P13797 630 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ACAT1P24752 427 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CLK1P49759 484 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 GRSF1Q12849 480 aaKnown RBP eCLIP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 TCHHL1Q5QJ38 904 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 SNAP47Q5SQN1 464 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ANKRD13AQ8IZ07 590 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 LARGE2Q8N3Y3 721 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 GRPEL2Q8TAA5 225 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 CHAC2Q8WUX2 184 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 DCPSQ96C86 337 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 REXO5Q96IC2 774 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 TM9SF2Q99805 663 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ZSWIM1Q9BR11 485 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ACAT2Q9BWD1 397 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 NARFLQ9H6Q4 476 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 HMG20AQ9NP66 347 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ALG13Q9NP73 1137 aaKnown RBP14.22□□□□□ -0.13
SHMT2-226ENST00000556825 TESMINQ9Y4I5 508 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 ALG6Q9Y672 507 aa14.22□□□□□ -0.13
SHMT2-226ENST00000556825 LRP6O75581 1613 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ATP6V1G2-DDX39BF2Z307 99 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 H0YC42 278 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ERVH48-1M5A8F1 160 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ATF2P15336 505 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 NELFEP18615 380 aaKnown RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 BTF3P20290 206 aaKnown RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 OPRL1P41146 370 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 HAAOP46952 286 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 OR3A3P47888 321 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ALDH18A1P54886 795 aaKnown RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 TPD52P55327 224 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 CDK10Q15131 360 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 CYP4F22Q6NT55 531 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 POTEAQ6S8J7 498 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 RNF207Q6ZRF8 634 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 BTLAQ7Z6A9 289 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ANKS1BQ7Z6G8 1248 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ZBTB46Q86UZ6 589 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 CNDP2Q96KP4 475 aaKnown RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 CEP19Q96LK0 163 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ZNF597Q96LX8 424 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 CPNE5Q9HCH3 593 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 ZNF277Q9NRM2 450 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-226ENST00000556825 PARVAQ9NVD7 372 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 SLC17A7Q9P2U7 560 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 SLC24A2Q9UI40 661 aa14.21□□□□□ -0.13
SHMT2-226ENST00000556825 PKD1L3Q7Z443 1732 aa14.21□□□□□ -0.14
SHMT2-226ENST00000556825 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.21□□□□□ -0.14
SHMT2-226ENST00000556825 SPOPO43791 374 aa14.21□□□□□ -0.14
SHMT2-226ENST00000556825 NCAM1P13591 858 aa14.21□□□□□ -0.14
SHMT2-226ENST00000556825 MAP4P27816 1152 aaKnown RBP14.21□□□□□ -0.14
SHMT2-226ENST00000556825 HOXA7P31268 230 aaPredicted RBP14.21□□□□□ -0.14
SHMT2-226ENST00000556825 EIF3EP60228 445 aaKnown RBP14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms