RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 YAF2Q8IY57 180 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 ZNF653Q96CK0 615 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CHFRQ96EP1 664 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 MS4A14Q96JA4 679 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 ASAH2Q9NR71 780 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 EHD2Q9NZN4 543 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 PACSIN2Q9UNF0 486 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-216ENST00000554975 APC2O95996 2303 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 PLXNB3Q9ULL4 1909 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 ASXL3Q9C0F0 2248 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 A0A1W2PRU2 124 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 HMGB1P1B2RPK0 211 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SART1O43290 800 aaKnown RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 HYAL3O43820 417 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 PHF2O75151 1096 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SYF2O95926 243 aaKnown RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CYP1A2P05177 515 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CYP11B1P15538 503 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 GGCXP38435 758 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 USP8P40818 1118 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 DLG4P78352 724 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CLDN10P78369 228 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SLC7A5Q01650 507 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CREB5Q02930 508 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 MRPL58Q14197 206 aaKnown RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SOWAHCQ53LP3 525 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 RNF19BQ6ZMZ0 732 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 ARID3BQ8IVW6 561 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 KLHL7Q8IXQ5 586 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 TMEM130Q8N3G9 435 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 ZNF564Q8TBZ8 553 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SEC14L1Q92503 715 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SAAL1Q96ER3 474 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 ZNF512Q96ME7 567 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 HHIPQ96QV1 700 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CGRRF1Q99675 332 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 ZSWIM1Q9BR11 485 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 FAM107BQ9H098 131 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 THAP2Q9H0W7 228 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 IKZF4Q9H2S9 585 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 CRISPLD1Q9H336 500 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 PTPRHQ9HD43 1115 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SMARCAL1Q9NZC9 954 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 PRDM4Q9UKN5 801 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 KLK13Q9UKR3 277 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 AGO2Q9UKV8 859 aaKnown RBP11.66□□□□□ -0.54
SHMT2-216ENST00000554975 NFU1Q9UMS0 254 aa11.66□□□□□ -0.54
SHMT2-216ENST00000554975 SCN1AP35498 2009 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 CCDC163A0A0D9SF12 145 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SMIM28A0A1B0GU29 152 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 BCLAF3A2AJT9 711 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA8IPA6NC78 632 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA8JA6NMD2 632 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 PATE3B3GLJ2 98 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 TISP43B9A030 160 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 BHMG1C9JSJ3 638 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ANKRD63C9JTQ0 380 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 CDX4O14627 284 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 DDX3YO15523 660 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SPOPO43791 374 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 PRAMEF12O95522 483 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 FGGP02679 453 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 FTLP02792 175 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 GLI1P08151 1106 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 PROZP22891 400 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ADSSP30520 456 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 CTNNA1P35221 906 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SLC1A1P43005 524 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 FNTAP49354 379 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 EIF3BP55884 814 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 YWHAEP62258 255 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 BIRC3Q13489 604 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ZSCAN26Q16670 478 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ZACNQ401N2 412 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 NAIF1Q69YI7 327 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 FSTL4Q6MZW2 842 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SLC39A4Q6P5W5 647 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 C1orf228Q6PIY5 440 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SV2AQ7L0J3 742 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ELMOD1Q8N336 334 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 DEFB124Q8NES8 71 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 PLEKHO2Q8TD55 490 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SLC20A1Q8WUM9 679 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 CASKIN2Q8WXE0 1202 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 IFT81Q8WYA0 676 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 CCDC127Q96BQ5 260 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 KREMEN1Q96MU8 473 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SLC38A7Q9NVC3 462 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 MTRF1LQ9UGC7 380 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 AFF4Q9UHB7 1163 aaKnown RBP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-216ENST00000554975 YIPF1Q9Y548 306 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 SCINQ9Y6U3 715 aa11.65□□□□□ -0.54
SHMT2-216ENST00000554975 ERICH4A6NGS2 130 aa11.64□□□□□ -0.55
SHMT2-216ENST00000554975 PODXLO00592 558 aa11.64□□□□□ -0.55
SHMT2-216ENST00000554975 ABLIM1O14639 778 aa11.64□□□□□ -0.55
SHMT2-216ENST00000554975 NDC80O14777 642 aa11.64□□□□□ -0.55
SHMT2-216ENST00000554975 TRAPPC3O43617 180 aa11.64□□□□□ -0.55
SHMT2-216ENST00000554975 SHOX2O60902 331 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-216ENST00000554975 DLATP10515 647 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms