RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 CCDC26Q8TAB7 109 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 UBXN4Q92575 508 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 SECISBP2LQ93073 1101 aaKnown RBP13.03□□□□□ -0.32
SHMT2-214ENST00000554604 OTUB2Q96DC9 234 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 NT5C1BQ96P26 610 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 SPAG5Q96R06 1193 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 NAGPAQ9UK23 515 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 SMG5Q9UPR3 1016 aaKnown RBP13.03□□□□□ -0.32
SHMT2-214ENST00000554604 SLC8A2Q9UPR5 921 aa13.03□□□□□ -0.32
SHMT2-214ENST00000554604 EML5Q05BV3 1969 aa13.02□□□□□ -0.32
SHMT2-214ENST00000554604 K7ESF4 209 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 RRP9O43818 475 aaKnown RBP13.02□□□□□ -0.33
SHMT2-214ENST00000554604 GFPT2O94808 682 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 CD19P15391 556 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 FERP16591 822 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PGFP49763 221 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PSEN1P49768 467 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 APBA1Q02410 837 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 DHCR24Q15392 516 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 ELF2Q15723 593 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 SGO2Q562F6 1265 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 C10orf120Q5SQS8 335 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.33
SHMT2-214ENST00000554604 ARHGAP17Q68EM7 881 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PKN3Q6P5Z2 889 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PRR23BQ6ZRT6 265 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 RSRC2Q7L4I2 434 aaKnown RBP13.02□□□□□ -0.33
SHMT2-214ENST00000554604 IRF2BP2Q7Z5L9 587 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 TADA2BQ86TJ2 420 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 PPM1KQ8N3J5 372 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 ANKRD52Q8NB46 1076 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 LRRN4CLQ8ND94 238 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 TRIM58Q8NG06 486 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 RPLP0P6Q8NHW5 317 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 ZFRQ96KR1 1074 aaKnown RBP13.02□□□□□ -0.33
SHMT2-214ENST00000554604 EPC1Q9H2F5 836 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 CYLDQ9NQC7 956 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 C2orf42Q9NWW7 574 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 HESX1Q9UBX0 185 aa13.02□□□□□ -0.33
SHMT2-214ENST00000554604 LSM7Q9UK45 103 aaKnown RBP13.02□□□□□ -0.33
SHMT2-214ENST00000554604 DMXL1Q9Y485 3027 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 A0A1W2PQH9 124 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 TBX18O95935 607 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 RALAP11233 206 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 ADH5P11766 374 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 RARGP13631 454 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 OPRD1P41143 372 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 STAT1P42224 750 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 BCAT1P54687 386 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 GFPT1Q06210 699 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 DMWDQ09019 674 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 ERCC6LQ2NKX8 1250 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 GOLGA7BQ2TAP0 167 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 LY6G5CQ5SRR4 150 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 BTBD8Q5XKL5 378 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 RHBDF2Q6PJF5 856 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 LONP2Q86WA8 852 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 RNF10Q8N5U6 811 aaKnown RBP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 ACDQ96AP0 544 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 CDK5RAP1Q96SZ6 601 aaKnown RBP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 STK33Q9BYT3 514 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 INTS2Q9H0H0 1204 aaKnown RBP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 PDCL3Q9H2J4 239 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 DNMT3LQ9UJW3 386 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 PCDHB4Q9Y5E5 795 aa13.01□□□□□ -0.33
SHMT2-214ENST00000554604 V9GYY5 206 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-214ENST00000554604 BTNL10A8MVZ5 291 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 APODP05090 189 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 VDRP11473 427 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 HOXA6P31267 233 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 CNR2P34972 360 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 EIF2DP41214 584 aaKnown RBP13□□□□□ -0.33
SHMT2-214ENST00000554604 SEC13P55735 322 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 GAD2Q05329 585 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 SIM2Q14190 667 aaPredicted RBP13□□□□□ -0.33
SHMT2-214ENST00000554604 LPAL2Q16609 132 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 ANO4Q32M45 955 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 C2orf27AQ580R0 203 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 KLHDC10Q6PID8 442 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 TMEM270Q6UE05 265 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 CEP68Q76N32 757 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 PIGZQ86VD9 579 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 BBS7Q8IWZ6 715 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 KIAA2013Q8IYS2 634 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 ARHGAP18Q8N392 663 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 DCLK2Q8N568 766 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 LMO3Q8TAP4 145 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 GOLGA1Q92805 767 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 PNKPQ96T60 521 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 KLF16Q9BXK1 252 aaPredicted RBP13□□□□□ -0.33
SHMT2-214ENST00000554604 UBXN6Q9BZV1 441 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 NMUR1Q9HB89 426 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13□□□□□ -0.33
SHMT2-214ENST00000554604 OSER1Q9NX31 292 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 APEX2Q9UBZ4 518 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 AJAP1Q9UKB5 411 aaPredicted RBP13□□□□□ -0.33
SHMT2-214ENST00000554604 GMEB2Q9UKD1 530 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 NUDT5Q9UKK9 219 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 TSPAN16Q9UKR8 245 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms