RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 A0A0U1RQF3 1178 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 M0QYT0 321 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 APOL1O14791 398 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 ENDOD1O94919 500 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 INHAP05111 366 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CKBP12277 381 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CAV1Q03135 178 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 SLC10A2Q12908 348 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 PIGWQ7Z7B1 504 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 MAP7D3Q8IWC1 876 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 TTC13Q8NBP0 860 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 GLT1D1Q96MS3 346 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 MTMR10Q9NXD2 777 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 AHCYL1O43865 530 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CREB3O43889 395 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 YWHAZP63104 245 aaKnown RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 MRPS5P82675 430 aaKnown RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 EFTUD2Q15029 972 aaKnown RBP eCLIP12.11□□□□□ -0.474e-8■■■■■ 44
SHMT2-212ENST00000554467 NOMO1Q15155 1222 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 TRIM71Q2Q1W2 868 aaKnown RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 BBS9Q3SYG4 887 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 SPDYCQ5MJ68 293 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 C6orf118Q5T5N4 469 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 OTUD1Q5VV17 481 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CCDC110Q8TBZ0 833 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CHMP6Q96FZ7 201 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 HSFY1Q96LI6 401 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 SNX10Q9Y5X0 201 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 MATKP42679 507 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 ANKRD20A2Q5SQ80 823 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 ANKRD20A1Q5TYW2 823 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 ANKRD20A3Q5VUR7 823 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 LRRTM3Q86VH5 581 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 TP53INP2Q8IXH6 220 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 BBOF1Q8ND07 529 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 SLC7A14Q8TBB6 771 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 SH3TC2Q8TF17 1288 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 MYLPFQ96A32 169 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 XPO6Q96QU8 1125 aaKnown RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 C11orf84Q9BUA3 381 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 NRDE2Q9H7Z3 1164 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 XPO7Q9UIA9 1087 aaKnown RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 EFR3BQ9Y2G0 817 aa12.11□□□□□ -0.47
SHMT2-212ENST00000554467 PRG3Q9Y2Y8 225 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-212ENST00000554467 CAPN9O14815 690 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 SSTR1P30872 391 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 PAPOLAP51003 745 aaKnown RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 SNX16P57768 344 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 TFDP2Q14188 446 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 DSC3Q14574 896 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 HIF1AQ16665 826 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 SLC30A9Q6PML9 568 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 EXOC3L1Q86VI1 746 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 OR10T2Q8NGX3 314 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 PGM2Q96G03 612 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ANLNQ9NQW6 1124 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 PIGVQ9NUD9 493 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 LIN7AO14910 233 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 PTPN9P43378 593 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ACADSBP45954 432 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 MORF4L2Q15014 288 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 TMED2Q15363 201 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 CD300LGQ6UXG3 332 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 MRPL10Q7Z7H8 261 aaKnown RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ECHDC2Q86YB7 292 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ZDHHC17Q8IUH5 632 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 CCDC197Q8NCU1 140 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ARHGEF2Q92974 986 aaKnown RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 CSPG4P5Q96PW8 444 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 WDR83Q9BRX9 315 aaKnown RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 PAPOLBQ9NRJ5 636 aaKnown RBP12.1□□□□□ -0.47
SHMT2-212ENST00000554467 RAB6BQ9NRW1 208 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 HCSTQ9UBK5 93 aa12.1□□□□□ -0.47
SHMT2-212ENST00000554467 ZBED1O96006 694 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FYNP06241 537 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 KRT16P08779 473 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 NCAM1P13591 858 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 NQO1P15559 274 aaKnown RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 NCALDP61601 193 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 PTK7Q13308 1070 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 EFHC1Q5JVL4 640 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 SCAMP5Q8TAC9 235 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 HHIPL1Q96JK4 782 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 B3GALT6Q96L58 329 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 USP29Q9HBJ7 922 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 PIH1D1Q9NWS0 290 aaKnown RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 ZFATQ9P243 1243 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FARP1Q9Y4F1 1045 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 THSD7BQ9C0I4 1608 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 EXOC1LA0A1B0GW35 172 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 A0A1W2PQ45 241 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 A0A1W2PQY0 241 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAM72CH0Y354 149 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 DDHD2O94830 711 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 GSTA1P08263 222 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 DESP17661 470 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 LHX1P48742 406 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 GATMP50440 423 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 PDK2Q15119 407 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 SLC25A52Q3SY17 297 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms