RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 FAM35AQ86V20 835 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 GALNT15Q8N3T1 639 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 SCAMP5Q8TAC9 235 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 RHBDD1Q8TEB9 315 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 KCNK16Q96T55 309 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 BBS2Q9BXC9 721 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 MIR1-1HGQ9H1L0 117 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 GAREM1Q9H706 876 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 CCSER2Q9H7U1 834 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 PRDM16Q9HAZ2 1276 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 CYP3A43Q9HB55 503 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 ITM2CQ9NQX7 267 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 TM7SF3Q9NS93 570 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 COMMD8Q9NX08 183 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 WSB2Q9NYS7 404 aaPredicted RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 IL37Q9NZH6 218 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 HMGXB4Q9UGU5 601 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 HOOK1Q9UJC3 728 aaKnown RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 RAD54BQ9Y620 910 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 PLXND1Q9Y4D7 1925 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 FAM92AA1XBS5 289 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 MEI4A8MW99 385 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 WASH3PC4AMC7 463 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 PRRT4C9JH25 899 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 NEDD8-MDP1E9PL57 170 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 BCAT2O15382 392 aaPredicted RBP12.43□□□□□ -0.42
SRP54-203ENST00000553544 CACNG3O60359 315 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 ZIC2O95409 532 aaPredicted RBP12.43□□□□□ -0.42
SRP54-203ENST00000553544 CER1O95813 267 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 IRF1P10914 325 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 EPB41P11171 864 aaKnown RBP12.43□□□□□ -0.42
SRP54-203ENST00000553544 NCAM1P13591 858 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 TYRP14679 529 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 OXTRP30559 389 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 MATKP42679 507 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 ZNF132P52740 706 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 C19orf57Q0VDD7 668 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 STARD3Q14849 445 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 HLA-BQ31612 363 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 DBX2Q6ZNG2 339 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 SCUBE3Q8IX30 993 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 ZMIZ2Q8NF64 920 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 SEMA4DQ92854 862 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 TOE1Q96GM8 510 aaKnown RBP12.43□□□□□ -0.42
SRP54-203ENST00000553544 FAXDC2Q96IV6 333 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 TWNKQ96RR1 684 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 GPR174Q9BXC1 333 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 SLC6A17Q9H1V8 727 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 CSNK1G1Q9HCP0 422 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.43□□□□□ -0.42
SRP54-203ENST00000553544 CACNA2D2Q9NY47 1150 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 MAN1B1Q9UKM7 699 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 PCDHGB2Q9Y5G2 931 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 PCDH15Q96QU1 1955 aa12.43□□□□□ -0.42
SRP54-203ENST00000553544 ATP8B3O60423 1300 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 A0A087WV48 116 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 TRIM49BA6NDI0 452 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 METTL12A8MUP2 240 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 SLC16A3O15427 465 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 CILPO75339 1184 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 BEST1O76090 585 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 CISD3P0C7P0 127 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 ATXN1LP0C7T5 689 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 ZDHHC11BP0C7U3 371 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 BMP6P22004 513 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 DGKGP49619 791 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 LRRC63Q05C16 580 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 GOLGA8FQ08AF8 430 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 GOLGA8DPQ0D2H9 430 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 ORC1Q13415 861 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 TPGS1Q6ZTW0 290 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 ZCCHC9Q8N567 271 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 PDCD7Q8N8D1 485 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 C12orf29Q8N999 325 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 WBP2Q969T9 261 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 SMARCD1Q96GM5 515 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 DHTKD1Q96HY7 919 aaPredicted RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 TSG101Q99816 390 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 SMOQ99835 787 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 MED10Q9BTT4 135 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 NUP58Q9BVL2 599 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 IMPG2Q9BZV3 1241 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 NIF3L1Q9GZT8 377 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 IL21RQ9HBE5 538 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 DMAP1Q9NPF5 467 aaPredicted RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 CD93Q9NPY3 652 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 ASH1LQ9NR48 2969 aaKnown RBP12.42□□□□□ -0.42
SRP54-203ENST00000553544 CHMP5Q9NZZ3 219 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 COQ4Q9Y3A0 265 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 STON1Q9Y6Q2 735 aa12.42□□□□□ -0.42
SRP54-203ENST00000553544 CEP192Q8TEP8 1941 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 GOLGA4Q13439 2230 aaKnown RBP12.41□□□□□ -0.42
SRP54-203ENST00000553544 GOLGA8CPA6NN73 597 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 PPP1R3GB7ZBB8 358 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 NPC1O15118 1278 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 FLRT2O43155 660 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 STX10O60499 249 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 AP1G2O75843 785 aa12.41□□□□□ -0.42
SRP54-203ENST00000553544 DKK1O94907 266 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms