RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GRAP2O75791 330 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 PROCP04070 461 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 FGF3P11487 239 aaPredicted RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 LAMB3Q13751 1172 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 CCNIQ14094 377 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 TMEM132AQ24JP5 1023 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 N4BP2L1Q5TBK1 243 aaPredicted RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 LPCAT4Q643R3 524 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 PGM2L1Q6PCE3 622 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 TSHZ1Q6ZSZ6 1077 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 FAM183BPQ6ZVS7 135 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 CCDC33Q8N5R6 958 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 ACTRT2Q8TDY3 377 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 C2orf40Q9H1Z8 148 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 NGRNQ9NPE2 291 aaKnown RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 MOCS1Q9NZB8 636 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 COMMD3-BMI1R4GMX3 469 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 IL18RAPO95256 599 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 MYL4P12829 197 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 UBA1P22314 1058 aaKnown RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 PROZP22891 400 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 SLC5A9Q2M3M2 681 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 MAP3K21Q5TCX8 1036 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 ATF7IP2Q5U623 682 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 RNF111Q6ZNA4 994 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 CYS1Q717R9 158 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 NCAPG2Q86XI2 1143 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 NME8Q8N427 588 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 C1orf127Q8N9H9 656 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 LRRN4Q8WUT4 740 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 CMTM5Q96DZ9 223 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 QTRT2Q9H974 415 aaKnown RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 RPF1Q9H9Y2 349 aaKnown RBP18.11■□□□□ 0.49
SYNE3-202ENST00000553340 CDH22Q9UJ99 828 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 ADAMTS6Q9UKP5 1117 aa18.11■□□□□ 0.49
SYNE3-202ENST00000553340 PDE5AO76074 875 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 SERPINE1P05121 402 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 CXCL8P10145 99 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 KCNA4P22459 653 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 ZNF280CQ8ND82 737 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 RNF217Q8TC41 542 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 GDPD5Q8WTR4 605 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PIWIL1Q96J94 861 aaKnown RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 AS3MTQ9HBK9 375 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PTPRHQ9HD43 1115 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 EMCNQ9ULC0 261 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PHIPQ8WWQ0 1821 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 GCATO75600 419 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 FARP2O94887 1054 aaPredicted RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PABPC4LP0CB38 370 aaKnown RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 PIM1P11309 404 aaPredicted RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 VCLP18206 1134 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 SH3BGRP55822 239 aaPredicted RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 BTKQ06187 659 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 FSTL1Q12841 308 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 CCDC14Q49A88 953 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 TTLL6Q8N841 843 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 USP6NLQ92738 828 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 CCDC124Q96CT7 223 aaKnown RBP18.1■□□□□ 0.49
SYNE3-202ENST00000553340 DTNBP1Q96EV8 351 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 HAPLN3Q96S86 360 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 TBCBQ99426 244 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 NRDE2Q9H7Z3 1164 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 DNAJC28Q9NX36 388 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 DCDC2Q9UHG0 476 aa18.1■□□□□ 0.49
SYNE3-202ENST00000553340 ACKR2O00590 384 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 PLIN3O60664 434 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 ITGB3P05106 788 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 GRK2P25098 689 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 IDH3AP50213 366 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 HMGCS2P54868 508 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 AQP4P55087 323 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 CDR2LQ86X02 465 aaPredicted RBP18.09■□□□□ 0.49
SYNE3-202ENST00000553340 NIM1KQ8IY84 436 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 DNERQ8NFT8 737 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 ZNF670Q9BS34 389 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 CYP3A43Q9HB55 503 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 CYP4F11Q9HBI6 524 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 RLFQ13129 1914 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 APBA3O96018 575 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 NFICP08651 508 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 PEX2P28328 305 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 SERPINB6P35237 376 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 MSLNQ13421 630 aaPredicted RBP18.09■□□□□ 0.49
SYNE3-202ENST00000553340 GRM2Q14416 872 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 MMEL1Q495T6 779 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 PPP6R3Q5H9R7 873 aaPredicted RBP18.09■□□□□ 0.49
SYNE3-202ENST00000553340 PDPK2PQ6A1A2 396 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 SDCCAG8Q86SQ7 713 aaPredicted RBP18.09■□□□□ 0.49
SYNE3-202ENST00000553340 LRRC71Q8N4P6 559 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 PIP4K2CQ8TBX8 421 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 CDKL2Q92772 493 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 SNRNP25Q9BV90 132 aaKnown RBP18.09■□□□□ 0.49
SYNE3-202ENST00000553340 ZCWPW1Q9H0M4 648 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 POMPQ9Y244 141 aa18.09■□□□□ 0.49
SYNE3-202ENST00000553340 A0A1B0GVG6 124 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 TPP1O14773 563 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 ALDOAP04075 364 aaKnown RBP18.08■□□□□ 0.49
SYNE3-202ENST00000553340 P4HA1P13674 534 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms