RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CCDC25Q86WR0 208 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 DNAAF5Q86Y56 855 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 C12orf56Q8IXR9 622 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 NRG4Q8WWG1 115 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 HIC2Q96JB3 615 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 OLFM3Q96PB7 478 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 ASB2Q96Q27 587 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 FAM213AQ9BRX8 229 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 MKNK1Q9BUB5 465 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 COLEC11Q9BWP8 271 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CHST7Q9NS84 486 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CLEC1BQ9P126 229 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CIDEBQ9UHD4 219 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 BARX2Q9UMQ3 279 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-216ENST00000552909 COG5Q9UP83 839 aa7.97□□□□□ -1.13
LIMA1-216ENST00000552909 CAPN9O14815 690 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 CBX6O95503 412 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 ADRB2P07550 413 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 CNPP09543 421 aaKnown RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 T-ENOLP0DO92 83 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 BMP1P13497 986 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 RPL17P18621 184 aaKnown RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 BRCC3P46736 316 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 MRPS5P82675 430 aaKnown RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 IL9RQ01113 521 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 CDR2Q01850 454 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 MPP2Q14168 576 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 LIN52Q52LA3 116 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 RTP2Q5QGT7 225 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 DCAF12L1Q5VU92 463 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 KIAA0319Q5VV43 1072 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 SLFN12LQ6IEE8 588 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 PDE12Q6L8Q7 609 aaKnown RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 EFHBQ8N7U6 833 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM174Q8WUU8 243 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 STMN2Q93045 179 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 C18orf8Q96DM3 657 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 KIF12Q96FN5 646 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF184Q99676 751 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 RPF1Q9H9Y2 349 aaKnown RBP7.96□□□□□ -1.14
LIMA1-216ENST00000552909 PLEKHA5Q9HAU0 1116 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 RHBDL2Q9NX52 303 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 IL1RAPL1Q9NZN1 696 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 CDH22Q9UJ99 828 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 HCFC2Q9Y5Z7 792 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 IRAK3Q9Y616 596 aa7.96□□□□□ -1.14
LIMA1-216ENST00000552909 PPEF2O14830 753 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CLASP2O75122 1294 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PSMG1O95456 288 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CYP1A1P04798 512 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 NFICP08651 508 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 TRIM49P0CI25 452 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 TRIM49CP0CI26 452 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PRKCIP41743 596 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 NDUFV1P49821 464 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DLG4P78352 724 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 FAM171A1Q5VUB5 890 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 JADE1Q6IE81 842 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 RFWD3Q6PCD5 774 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PRSS55Q6UWB4 352 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CBWD2Q8IUF1 395 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 GLYCTKQ8IVS8 523 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CTNNBL1Q8WYA6 563 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 ART4Q93070 314 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PPP2R3CQ969Q6 453 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SLC35C1Q96A29 364 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DDX27Q96GQ7 796 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 MSLNLQ96KJ4 702 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 NECAB3Q96P71 396 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 APOL5Q9BWW9 433 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CDC42EP4Q9H3Q1 356 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 METTL5Q9NRN9 209 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 MRPL17Q9NRX2 175 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF212Q9UDV6 495 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PCYOX1Q9UHG3 505 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 LNPEPQ9UIQ6 1025 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 PHTF1Q9UMS5 762 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 NENFQ9UMX5 172 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SCN1AP35498 2009 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 WDFY4Q6ZS81 3184 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CARNS1A5YM72 827 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 TEX28O15482 410 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 HNRNPRO43390 633 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 KRT36O76013 467 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 ACSL3O95573 720 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 ZCCHC18P0CG32 403 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 UCHL3P15374 230 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 EPCAMP16422 314 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 GARTP22102 1010 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 FOXN2P32314 431 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 VAMP7P51809 220 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 INHBCP55103 352 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 BPIFB4P59827 614 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DSG1Q02413 1049 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 BFSP1Q12934 665 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF211Q13398 564 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SNRNP35Q16560 246 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 USP41Q3LFD5 358 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DAB2IPQ5VWQ8 1189 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms