RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 MFSD1Q9H3U5 465 aa16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 DDIT4Q9NX09 232 aa16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 RRN3Q9NYV6 651 aa16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 COX16Q9P0S2 106 aa16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 AGO1Q9UL18 857 aaKnown RBP16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 TLR6Q9Y2C9 796 aa16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 KIF26AQ9ULI4 1882 aaPredicted RBP16.9■□□□□ 0.3
CHMP1A-209ENST00000550872 MYOFQ9NZM1 2061 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 SSU72P8A0A1W2PR75 194 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 OTOL1A6NHN0 477 aaPredicted RBP16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 SIGLEC16A6NMB1 481 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 M0QYT0 321 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 IRAK2O43187 625 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 IGLV3-25P01717 112 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 IGLV3-27P01718 113 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 CYP17A1P05093 508 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 GLULP15104 373 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 RRM1P23921 792 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 CDC25BP30305 580 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 SULT1E1P49888 294 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 NME3Q13232 169 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 MAPK8IP2Q13387 824 aaPredicted RBP16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 DHCR24Q15392 516 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 LY6G5CQ5SRR4 150 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 CCDC122Q5T0U0 273 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 NUGGCQ68CJ6 796 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 ALKBH5Q6P6C2 394 aaKnown RBP16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 RHBDF2Q6PJF5 856 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 ARCQ7LC44 396 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 JOSD2Q8TAC2 188 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 RNF34Q969K3 372 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 FCRL2Q96LA5 508 aaPredicted RBP16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 NPY6RQ99463 290 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 ISCUQ9H1K1 167 aa16.89■□□□□ 0.29
CHMP1A-209ENST00000550872 ANKRD62A6NC57 917 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 GOLGA6L3A6NEY3 463 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SPECC1L-ADORA2AF8WAN1 911 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 MAN2B1O00754 1011 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 AKR1B10O60218 316 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 ADH1CP00326 375 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 PDGFBP01127 241 aaPredicted RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 APOEP02649 317 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 PDGFRAP16234 1089 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 CD72P21854 359 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 MLLT6P55198 1093 aaPredicted RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 STARD6P59095 220 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 AMPD2Q01433 879 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SLC25A52Q3SY17 297 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 ZC3H12AQ5D1E8 599 aaKnown RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TRNP1Q6NT89 227 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TPGS1Q6ZTW0 290 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 RALGPS2Q86X27 583 aaPredicted RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SPC24Q8NBT2 197 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 FLCNQ8NFG4 579 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 RXFP2Q8WXD0 754 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 PBXIP1Q96AQ6 731 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 ZNF653Q96CK0 615 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TRIM11Q96F44 468 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SLC39A13Q96H72 371 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 CCDC42Q96M95 316 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 CFAP57Q96MR6 1250 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TBCBQ99426 244 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 KCNH6Q9H252 994 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 NHEJ1Q9H9Q4 299 aaPredicted RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TBC1D17Q9HA65 648 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SPHK2Q9NRA0 654 aa16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 CNOT8Q9UFF9 292 aaKnown RBP16.88■□□□□ 0.29
CHMP1A-209ENST00000550872 TCRBV5S1A1TA0A578 114 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ATMINO43313 823 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ACSL4O60488 711 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 MOCS2O96007 188 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 F9P00740 461 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 MYBL1P10243 752 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 SLC2A3P11169 496 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ADH5P11766 374 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 TFE3P19532 575 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ABCB4P21439 1286 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 SDC4P31431 198 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 CTHP32929 405 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 GJA4P35212 333 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 RFC1P35251 1148 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 CHKAP35790 457 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 SLC11A2P49281 568 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 GAD2Q05329 585 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 DEUP1Q05D60 604 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 GFPT1Q06210 699 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 SLC18A3Q16572 532 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ASTE1Q2TB18 679 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 PLEKHA7Q6IQ23 1121 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 DCUN1D2Q6PH85 259 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ZNF852Q6ZMS4 543 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 SND1Q7KZF4 910 aaKnown RBP eCLIP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 TMEM25Q86YD3 366 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 FAM3CQ92520 227 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 NT5C3BQ969T7 300 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 MSANTD3Q96H12 275 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 PARVAQ9NVD7 372 aa16.87■□□□□ 0.29
CHMP1A-209ENST00000550872 MYO1AQ9UBC5 1043 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms