RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ETNK2Q9NVF9 386 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 MTSS1O43312 755 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NDUFS3O75489 264 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NUDT17P0C025 328 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 GBE1Q04446 702 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 N4BP2L1Q5TBK1 243 aaPredicted RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 FAM171A1Q5VUB5 890 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 ZNF75CPQ92670 426 aaPredicted RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 ULK4Q96C45 1275 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 C12orf42Q96LP6 360 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NRDE2Q9H7Z3 1164 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 IL1RL2Q9HB29 575 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 RPTORQ8N122 1335 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 E9PBE3 544 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 KLHL41O60662 606 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 MSCO60682 206 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 ALDH7A1P49419 539 aaKnown RBP15.44■□□□□ 0.06
CUX1-214ENST00000550008 MAP2K5Q13163 448 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 SLC24A3Q9HC58 644 aa15.44■□□□□ 0.06
CUX1-214ENST00000550008 NPR3P17342 541 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 ATXN1P54253 815 aaKnown RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 ITIH4Q14624 930 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SLC39A12Q504Y0 691 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 PTAR1Q7Z6K3 402 aaPredicted RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 POU5F2Q8N7G0 328 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 OR52K1Q8NGK4 314 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 PPTC7Q8NI37 304 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 IL1RAPL1Q9NZN1 696 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 PTPRJQ12913 1337 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SMIM28A0A1B0GU29 152 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 GNGT2O14610 69 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 BUD23O43709 281 aaKnown RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 VAPBO95292 243 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 UNGP13051 313 aaPredicted RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 HADHAP40939 763 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 TUBP50607 506 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 MBTD1Q05BQ5 628 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 KRT80Q6KB66 452 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 GPR152Q8TDT2 470 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 ZCWPW1Q9H0M4 648 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 DPEP3Q9H4B8 488 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 POPDC2Q9HBU9 364 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 LRRC4CQ9HCJ2 640 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 AKAP11Q9UKA4 1901 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 MYH3P11055 1940 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 KIF3CO14782 793 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 CILPO75339 1184 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SMPD1P17405 629 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SERPINB3P29508 390 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 XYLT1Q86Y38 959 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 ANKRD52Q8NB46 1076 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SLC4A11Q8NBS3 891 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SPOCK2Q92563 424 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 TWNKQ96RR1 684 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 YIPF3Q9GZM5 350 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 TRPV6Q9H1D0 765 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 UPF3AQ9H1J1 476 aaKnown RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 OR12D3Q9UGF7 316 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 RUVBL2Q9Y230 463 aaKnown RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 PQBP1O60828 265 aaKnown RBP15.43■□□□□ 0.06
CUX1-214ENST00000550008 MMP3P08254 477 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 PEX5P50542 639 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.43■□□□□ 0.06
CUX1-214ENST00000550008 SH3TC2Q8TF17 1288 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 WNT8BQ93098 351 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 EFHD1Q9BUP0 239 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 FAM96AQ9H5X1 160 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 BAG5Q9UL15 447 aa15.43■□□□□ 0.06
CUX1-214ENST00000550008 MANSC4A6NHS7 340 aaPredicted RBP15.42■□□□□ 0.06
CUX1-214ENST00000550008 SNX3O60493 162 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ANXA9O76027 345 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 RGS20O76081 388 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 AP2B1P63010 937 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 MGAT5Q09328 741 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ANKRD22Q5VYY1 191 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ANLNQ9NQW6 1124 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 LATS2Q9NRM7 1088 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 COL18A1P39060 1754 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 TSPAN1O60635 241 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 SUPT7LO94864 414 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 FBXO21O94952 628 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 SERPINB5P36952 375 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 HARS2P49590 506 aaKnown RBP15.42■□□□□ 0.06
CUX1-214ENST00000550008 SNX17Q15036 470 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 TMEM259Q4ZIN3 620 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ANKRD20A2Q5SQ80 823 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ANKRD20A1Q5TYW2 823 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 C4orf22Q6V702 233 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 NT5DC4Q86YG4 428 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 SMARCD1Q96GM5 515 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 APBA2Q99767 749 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 STXBP5LQ9Y2K9 1186 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 TRPV2Q9Y5S1 764 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 PHGDHO43175 533 aaKnown RBP15.42■□□□□ 0.06
CUX1-214ENST00000550008 GLRA3O75311 464 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 RALBP11234 206 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 GRM5P41594 1212 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 PLK1P53350 603 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 CSHL1Q14406 222 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 RASA2Q15283 850 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms