RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 EIF4EBP2Q13542 120 aaPredicted RBP22.06■■□□□ 1.12
VPS29-206ENST00000549578 VITQ6UXI7 678 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 DDX42Q86XP3 938 aaKnown RBP eCLIP22.06■■□□□ 1.12
VPS29-206ENST00000549578 RHOT2Q8IXI1 618 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 FAM172AQ8WUF8 416 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 ELSPBP1Q96BH3 223 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 FCRL2Q96LA5 508 aaPredicted RBP22.06■■□□□ 1.12
VPS29-206ENST00000549578 CNPY3Q9BT09 278 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 ECI2O75521 394 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 IGLV3-27P01718 113 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 NNTQ13423 1086 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 GRM2Q14416 872 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 ZC3H12AQ5D1E8 599 aaKnown RBP22.06■■□□□ 1.12
VPS29-206ENST00000549578 BNIPLQ7Z465 357 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 BPIFB1Q8TDL5 484 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 FNIP1Q8TF40 1166 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 PLD4Q96BZ4 506 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 PGAP3Q96FM1 320 aaPredicted RBP22.06■■□□□ 1.12
VPS29-206ENST00000549578 SLC39A13Q96H72 371 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 OBP2AQ9NY56 170 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 SH3BP1Q9Y3L3 701 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 DUSP10Q9Y6W6 482 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 GREM1O60565 184 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 KLKB1P03952 638 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 ASGR2P07307 311 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 TCF3P15923 654 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 RDXP35241 583 aaKnown RBP22.05■■□□□ 1.12
VPS29-206ENST00000549578 KPNA1P52294 538 aaPredicted RBP22.05■■□□□ 1.12
VPS29-206ENST00000549578 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS29-206ENST00000549578 CENPIQ92674 756 aaPredicted RBP22.05■■□□□ 1.12
VPS29-206ENST00000549578 E2F7Q96AV8 911 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 KCNK12Q9HB15 430 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 TRIM10Q9UDY6 481 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 SALL4Q9UJQ4 1053 aa22.05■■□□□ 1.12
VPS29-206ENST00000549578 MYO1FO00160 1098 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 PJA2O43164 708 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 ENDOD1O94919 500 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 CCDC175P0C221 793 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 CORO1AP31146 461 aaKnown RBP22.04■■□□□ 1.12
VPS29-206ENST00000549578 NOP2P46087 812 aaKnown RBP22.04■■□□□ 1.12
VPS29-206ENST00000549578 HDAC4P56524 1084 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 RING1Q06587 406 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 STRADAQ7RTN6 431 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 FAM131BQ86XD5 332 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 MFSD6LQ8IWD5 586 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 RNF34Q969K3 372 aa22.04■■□□□ 1.12
VPS29-206ENST00000549578 MTA2O94776 668 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 F9P00740 461 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 CXCR3P49682 368 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 TCEAL1Q15170 157 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 DAB2IPQ5VWQ8 1189 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 SND1Q7KZF4 910 aaKnown RBP eCLIP22.03■■□□□ 1.124e-6■■■□□ 14.7
VPS29-206ENST00000549578 DENND1CQ8IV53 801 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 ZFYVE19Q96K21 471 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 IP6K2Q9UHH9 426 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 LSM7Q9UK45 103 aaKnown RBP22.03■■□□□ 1.12
VPS29-206ENST00000549578 WNT6Q9Y6F9 365 aa22.03■■□□□ 1.12
VPS29-206ENST00000549578 A0A0A6YYK5 440 aaPredicted RBP22.02■■□□□ 1.12
VPS29-206ENST00000549578 E2F8A0AVK6 867 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 C19orf67A6NJJ6 358 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 TMEM110-MUSTN1A8MSY1 372 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 MOCS2O96007 188 aaPredicted RBP22.02■■□□□ 1.12
VPS29-206ENST00000549578 DESP17661 470 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 PSMC3P17980 439 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 CCR1P32246 355 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 HARS2P49590 506 aaKnown RBP22.02■■□□□ 1.12
VPS29-206ENST00000549578 KIF5AQ12840 1032 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 NUGGCQ68CJ6 796 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 Q6ZNB5 142 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 HTR3DQ70Z44 454 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 BBS7Q8IWZ6 715 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 TXLNBQ8N3L3 684 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 ARFGAP1Q8N6T3 406 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 ANLNQ9NQW6 1124 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.02■■□□□ 1.12
VPS29-206ENST00000549578 IGSF9Q9P2J2 1179 aa22.02■■□□□ 1.12
VPS29-206ENST00000549578 XPO7Q9UIA9 1087 aaKnown RBP22.02■■□□□ 1.12
VPS29-206ENST00000549578 BUB1O43683 1085 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 APOEP02649 317 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 FCHO2Q0JRZ9 810 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 PIGHQ14442 188 aaPredicted RBP22.01■■□□□ 1.11
VPS29-206ENST00000549578 MESDQ14696 234 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 PPP2R5DQ14738 602 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 CC2D1AQ6P1N0 951 aaPredicted RBP22.01■■□□□ 1.11
VPS29-206ENST00000549578 CPNE8Q86YQ8 564 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 UNC45BQ8IWX7 931 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 YAF2Q8IY57 180 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 DEPDC1BQ8WUY9 529 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 NXPE3Q969Y0 559 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 ASIC4Q96FT7 647 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 DCLK3Q9C098 648 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 WDCPQ9H6R7 721 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 TMPRSS4Q9NRS4 437 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 AGO1Q9UL18 857 aaKnown RBP22.01■■□□□ 1.11
VPS29-206ENST00000549578 PPP2R2CQ9Y2T4 447 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 MYO10Q9HD67 2058 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 BTNL10A8MVZ5 291 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 KCNU1A8MYU2 1149 aa22.01■■□□□ 1.11
VPS29-206ENST00000549578 I6L893 689 aaPredicted RBP22.01■■□□□ 1.11
VPS29-206ENST00000549578 LRCH4O75427 683 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms