RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SPG21Q9NZD8 308 aa13.93□□□□□ -0.18
PTCH1-215ENST00000547672 CWC15Q9P013 229 aaKnown RBP13.93□□□□□ -0.18
PTCH1-215ENST00000547672 HEY1Q9Y5J3 304 aa13.93□□□□□ -0.18
PTCH1-215ENST00000547672 HMGB1P1B2RPK0 211 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 HAPLN1P10915 354 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 SARNPP82979 210 aaKnown RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 COG7P83436 770 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 CBX1P83916 185 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 GABPB1Q06547 395 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 PPIGQ13427 754 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 BTG3Q14201 252 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 PAFAH1B3Q15102 231 aaKnown RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 TRIP13Q15645 432 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 LRRC26Q2I0M4 334 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 SLC45A4Q5BKX6 768 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 C6orf118Q5T5N4 469 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 SLC8B1Q6J4K2 584 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 MSANTD2Q6P1R3 559 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 RHBDF2Q6PJF5 856 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 KCNT2Q6UVM3 1135 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 DENND5BQ6ZUT9 1274 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 CENPUQ71F23 418 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 GPRIN1Q7Z2K8 1008 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 ZNF276Q8N554 614 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 LZTR1Q8N653 840 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 CCDC185Q8N715 623 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 PQLC3Q8N755 202 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 TSEN2Q8NCE0 465 aaKnown RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 FBXO22Q8NEZ5 403 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 TFB1MQ8WVM0 346 aaKnown RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 OVCA2Q8WZ82 227 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 NDRG1Q92597 394 aaKnown RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 ZNF689Q96CS4 500 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 ZIM3Q96PE6 472 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 TMEM109Q9BVC6 243 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 KLC2Q9H0B6 622 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 NEUROG2Q9H2A3 272 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 IL23AQ9NPF7 189 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTCH1-215ENST00000547672 PIGVQ9NUD9 493 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 GPATCH2LQ9NWQ4 482 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 FNIP2Q9P278 1114 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 MTRRQ9UBK8 725 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 PCDHB12Q9Y5F1 795 aa13.92□□□□□ -0.18
PTCH1-215ENST00000547672 SYNJ2BP-COX16A0A087WUM0 186 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 FAM92AA1XBS5 289 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 F8W810 466 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 FGF10O15520 208 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 GCATO75600 419 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 SOD2P04179 222 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 IVLP07476 585 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 TSHRP16473 764 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ATP2A2P16615 1042 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 TFE3P19532 575 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ATP5DP30049 168 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 PPP3CCP48454 512 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 LBX1P52954 281 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ARPP19P56211 112 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ARL4CP56559 192 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 TPI1P60174 286 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ZNF33AQ06730 810 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 PSMD5Q16401 504 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 CA9Q16790 459 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 CCDC142Q17RM4 750 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 MGAT5BQ3V5L5 792 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 HEATR6Q6AI08 1181 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 RFX8Q6ZV50 586 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 HFE2Q6ZVN8 426 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 BHLHA9Q7RTU4 235 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ZC3H18Q86VM9 953 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 CCDC25Q86WR0 208 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 LRRC49Q8IUZ0 686 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 ARFGAP2Q8N6H7 521 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 FAM71DQ8N9W8 422 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 DQX1Q8TE96 717 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 DIS3LQ8TF46 1054 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 RIN2Q8WYP3 895 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 EDEM1Q92611 657 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 C1orf74Q96LT6 269 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 RHOBTB2Q9BYZ6 727 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 RETREG1Q9H6L5 497 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 CWH43Q9H720 699 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 CATSPERBQ9H7T0 1116 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 WDR6Q9NNW5 1121 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 PRDM5Q9NQX1 630 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 TMEM30AQ9NV96 361 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 MTMR10Q9NXD2 777 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 COX16Q9P0S2 106 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 OR12D3Q9UGF7 316 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 AFF4Q9UHB7 1163 aaKnown RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 TLR6Q9Y2C9 796 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 MICAL3Q7RTP6 2002 aa13.91□□□□□ -0.18
PTCH1-215ENST00000547672 FNDC1Q4ZHG4 1894 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-215ENST00000547672 PTPRDP23468 1912 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 MTMR11A4FU01 709 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 GOLGA6CA6NDK9 693 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 C5orf60A6NFR6 353 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 AGPSO00116 658 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 CHADO15335 359 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms