RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 LTBP4Q8N2S1 1624 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 ATMINO43313 823 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 S100A9P06702 114 aaKnown RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 ATXN3P54252 364 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 GEMP55040 296 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 TRIM25Q14258 630 aaKnown RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 SEC23AQ15436 765 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 TRIM71Q2Q1W2 868 aaKnown RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 PIGWQ7Z7B1 504 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 CENPLQ8N0S6 344 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 NLGN1Q8N2Q7 840 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 KIAA0895Q8NCT3 520 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 THUMPD3Q9BV44 507 aaKnown RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 VTA1Q9NP79 307 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 FAM217BQ9NTX9 383 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-212ENST00000546744 TBCCD1Q9NVR7 557 aa13.15□□□□□ -0.3
PTCH1-212ENST00000546744 NPHP3-ACAD11A0A0J9YXS1 232 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 RGSL1A5PLK6 1076 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TPD52L2O43399 206 aaKnown RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 NDUFS3O75489 264 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HIST1H2AGP0C0S8 130 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HIST1H2ADP20671 130 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ADSLP30566 484 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 GRIK1P39086 918 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 OSTNP61366 133 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 BFSP2Q13515 415 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TRIP4Q15650 581 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 NEDD8Q15843 81 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 WDR72Q3MJ13 1102 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TRABD2AQ86V40 505 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HIST1H2AHQ96KK5 128 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HIST1H2AJQ99878 128 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 H2AFJQ9BTM1 129 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 CHID1Q9BWS9 393 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 NT5C1AQ9BXI3 368 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HPS4Q9NQG7 708 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ADAM28Q9UKQ2 775 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 NDUFAF1Q9Y375 327 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TMEM114B3SHH9 223 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ANXA6P08133 673 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 MAD2L1Q13257 205 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ZNF235Q14590 738 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 METTL21CQ5VZV1 264 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 MRNIPQ6NTE8 343 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 CLNKQ7Z7G1 428 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ATPAF2Q8N5M1 289 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 PYDC1Q8WXC3 89 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 PURBQ96QR8 312 aaKnown RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 CPNE1Q99829 537 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 KCTD14Q9BQ13 255 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 SYTL2Q9HCH5 934 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 DYRK4Q9NR20 520 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 RAPGEFL1Q9UHV5 662 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 SLC12A4Q9UP95 1085 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TRAFD1O14545 582 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ATP6V1G1O75348 118 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 PGM3O95394 542 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 GJB6O95452 261 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ABL1P00519 1130 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 CRABP2P29373 138 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TSTA3Q13630 321 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 N4BP2L1Q5TBK1 243 aaPredicted RBP13.14□□□□□ -0.31
PTCH1-212ENST00000546744 HEATR4Q86WZ0 1026 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 SNX32Q86XE0 403 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 PPP1R36Q96LQ0 422 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 PLEKHG4BQ96PX9 1271 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 NUDT12Q9BQG2 462 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 ACSS3Q9H6R3 686 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 WDR41Q9HAD4 459 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 C3orf18Q9UK00 162 aa13.14□□□□□ -0.31
PTCH1-212ENST00000546744 TCP10L2B9ZVM9 353 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ZNF263O14978 683 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 AKAP3O75969 853 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 RRM1P23921 792 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 RPL10AP62906 217 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TCHHL1Q5QJ38 904 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 PRR23BQ6ZRT6 265 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CATSPER4Q7RTX7 472 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SLC25A41Q8N5S1 370 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 DRAXINQ8NBI3 349 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 FAM84BQ96KN1 310 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TRIM8Q9BZR9 551 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 UBXN6Q9BZV1 441 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CPVLQ9H3G5 476 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CATSPERBQ9H7T0 1116 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 PNMA3Q9UL41 463 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TMED5Q9Y3A6 229 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ADGRA2Q96PE1 1338 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 DNM1LO00429 736 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SEC24AO95486 1093 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 GH2P01242 217 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TNK2Q07912 1038 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 GTF2H3Q13889 308 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 GIT2Q14161 759 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 GLRA4Q5JXX5 417 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SPANXN3Q5MJ09 141 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 MCOLN2Q8IZK6 566 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 DIS3LQ8TF46 1054 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CAPSLQ8WWF8 208 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms