RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PDK2Q15119 407 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 CDO1Q16878 200 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 EFHC2Q5JST6 749 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 RARS2Q5T160 578 aaKnown RBP16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 ERMARDQ5T6L9 678 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 PAPD7Q5XG87 772 aaKnown RBP16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 HS6ST3Q8IZP7 471 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 ATP6V0D2Q8N8Y2 350 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 EXD1Q8NHP7 514 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 KIF18AQ8NI77 898 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 E2F7Q96AV8 911 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 BTN2A3PQ96KV6 586 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 CLDND1Q9NY35 253 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 OBP2AQ9NY56 170 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 RNF14Q9UBS8 474 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 RASAL2Q9UJF2 1139 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 HYOU1Q9Y4L1 999 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 FAM170AA1A519 330 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 TMEM110-MUSTN1A8MSY1 372 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 TBX10O75333 385 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 MOSPD3O75425 235 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 CKMP06732 381 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 FSHRP23945 695 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 CASQ1P31415 396 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 PTPN7P35236 360 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 ADRA1BP35368 520 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 HARS2P49590 506 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 DPYSL2Q16555 572 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 ODF2Q5BJF6 829 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 CMTM8Q8IZV2 173 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 ARFGAP1Q8N6T3 406 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 SMRP1Q8NCR6 262 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 FAM71BQ8TC56 605 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 PBKQ96KB5 322 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 C1orf74Q96LT6 269 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 CDX2Q99626 313 aaPredicted RBP16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 DDX50Q9BQ39 737 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 TLR10Q9BXR5 811 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 OSBPL2Q9H1P3 480 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 S1PR5Q9H228 398 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 DONSONQ9NYP3 566 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 LSM7Q9UK45 103 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 USTQ9Y2C2 406 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 EFR3BQ9Y2G0 817 aa16.64■□□□□ 0.25
PRPF40A-212ENST00000545856 DOCK4Q8N1I0 1966 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 KCNU1A8MYU2 1149 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 LINC01565O15544 149 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 FTCDO95954 541 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 MBL2P11226 248 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 TNNT1P13805 278 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 FOSL2P15408 326 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 CCR2P41597 374 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 PGFP49763 221 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 PEX5P50542 639 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 NME3Q13232 169 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 GPR158Q5T848 1215 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 RCOR2Q8IZ40 523 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 RNF34Q969K3 372 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 FCRL2Q96LA5 508 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 WDR24Q96S15 920 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 ZNF670Q9BS34 389 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 KLF16Q9BXK1 252 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 TRPV4Q9HBA0 871 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 HCFC1R1Q9NWW0 138 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 DNAI1Q9UI46 699 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 STOML2Q9UJZ1 356 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 SNX12Q9UMY4 172 aa16.63■□□□□ 0.25
PRPF40A-212ENST00000545856 KIF26AQ9ULI4 1882 aaPredicted RBP16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SLC12A8A0AV02 714 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 C2orf78A6NCI8 922 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 ZRANB2O95218 330 aaKnown RBP eCLIP16.62■□□□□ 0.256e-7■□□□□ 8.7
PRPF40A-212ENST00000545856 LTBRP36941 435 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SSR1P43307 286 aaKnown RBP16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 HCAR3P49019 387 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SLC11A2P49281 568 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 PPP2R5EQ16537 467 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SLC5A9Q2M3M2 681 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 TXNDC8Q6A555 127 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 FAM131BQ86XD5 332 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 DEFB123Q8N688 67 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 OTUB2Q96DC9 234 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 NAP1L3Q99457 506 aaPredicted RBP16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 TRPC7Q9HCX4 862 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SFMBT1Q9UHJ3 866 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 CD207Q9UJ71 328 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 TTC7AQ9ULT0 858 aaPredicted RBP16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 FZD10Q9ULW2 581 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 AP4E1Q9UPM8 1137 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 SAR1BQ9Y6B6 198 aa16.62■□□□□ 0.25
PRPF40A-212ENST00000545856 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 DDX3YO15523 660 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 RARAP10276 462 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 L1CAMP32004 1257 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 TAS2R40P59535 323 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 PITX1P78337 314 aaPredicted RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 RBM10P98175 930 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 CYP4F8P98187 520 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 TEAD2Q15562 447 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 PUS10Q3MIT2 529 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SH3PXD2AQ5TCZ1 1133 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms