RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TNFSF13BQ9Y275 285 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 MTO1Q9Y2Z2 717 aaKnown RBP15.56■□□□□ 0.08
USP28-214ENST00000545540 PSMG1O95456 288 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 SURF1Q15526 300 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 SMC1BQ8NDV3 1235 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 C2orf40Q9H1Z8 148 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 NRDE2Q9H7Z3 1164 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 GJD2Q9UKL4 321 aa15.56■□□□□ 0.08
USP28-214ENST00000545540 LCTP09848 1927 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 IGKV6-21A0A0C4DH24 114 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 EDNRBP24530 442 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 ATXN3P54252 364 aaPredicted RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 KCTD2Q14681 263 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 MAP7D3Q8IWC1 876 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 GSTCDQ8NEC7 633 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 ALKBH8Q96BT7 664 aaKnown RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 SAR1AQ9NR31 198 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 PNPOQ9NVS9 261 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 CSADQ9Y600 493 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 ADCY6O43306 1168 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 C22orf31O95567 290 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 RPS12P25398 132 aaKnown RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 MGAT1P26572 445 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 MSX2P35548 267 aaPredicted RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 OLFML1Q6UWY5 402 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 NME8Q8N427 588 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 PYDC1Q8WXC3 89 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 FAM167AQ96KS9 214 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 SIGLEC10Q96LC7 697 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 EIF2AQ9BY44 585 aaKnown RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 RBPJLQ9UBG7 517 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 EFR3BQ9Y2G0 817 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 DNAJC16Q9Y2G8 782 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 A8MXQ7 604 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 CLDN5O00501 218 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 RARBP10826 455 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 ATP6V1C1P21283 382 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 ACAT1P24752 427 aaKnown RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 NME3Q13232 169 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 FASTKD1Q53R41 847 aaKnown RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 WASHC2DQ5SRD0 308 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 LRRC74BQ6ZQY2 392 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.55■□□□□ 0.08
USP28-214ENST00000545540 NLGN2Q8NFZ4 835 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 PHACTR1Q9C0D0 580 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 GBA2Q9HCG7 927 aaPredicted RBP15.55■□□□□ 0.08
USP28-214ENST00000545540 LNPEPQ9UIQ6 1025 aa15.55■□□□□ 0.08
USP28-214ENST00000545540 A6NJR5 290 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 CHADO15335 359 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 ADCYAP1R1P41586 468 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 N4BP2L1Q5TBK1 243 aaPredicted RBP15.54■□□□□ 0.08
USP28-214ENST00000545540 PAXIP1Q6ZW49 1069 aaPredicted RBP15.54■□□□□ 0.08
USP28-214ENST00000545540 STKLD1Q8NE28 680 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 UBP1Q9NZI7 540 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 SSC5DA1L4H1 1573 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 TPP1O14773 563 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 VAV1P15498 845 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 DLG2Q15700 870 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 FAM219BQ5XKK7 198 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 RIPOR1Q6ZS17 1223 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 ZNF333Q96JL9 665 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 SMARCAD1Q9H4L7 1026 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 CAB39LQ9H9S4 337 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 AP4E1Q9UPM8 1137 aa15.54■□□□□ 0.08
USP28-214ENST00000545540 TRAFD1O14545 582 aaPredicted RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 CNMDO75829 334 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 WFS1O76024 890 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 TGFB3P10600 412 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 NCF2P19878 526 aaPredicted RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 ARRB2P32121 409 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 NDUFV1P49821 464 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 PDE1BQ01064 536 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 USP4Q13107 963 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 STX3Q13277 289 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 C1orf146Q5VVC0 180 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 CRLF3Q8IUI8 442 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 APOBEC3FQ8IUX4 373 aaKnown RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 ZNF778Q96MU6 729 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 PANX3Q96QZ0 392 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 ZCWPW1Q9H0M4 648 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 STOML1Q9UBI4 398 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 PSME4Q14997 1843 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 CITO14578 2027 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 FZD9O00144 591 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 ENDOD1O94919 500 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 GABRB2P47870 512 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 GRM1Q13255 1194 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 TSNAXIP1Q2TAA8 658 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 KCTD15Q96SI1 283 aaPredicted RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 TBCBQ99426 244 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 GPRC5DQ9NZD1 345 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 DTLQ9NZJ0 730 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 PPM1HQ9ULR3 514 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 L1CAMP32004 1257 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 SLC6A3Q01959 620 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 FAM47CQ5HY64 1035 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 HEATR6Q6AI08 1181 aaKnown RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 LCLAT1Q6UWP7 414 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 CCNJLQ8IV13 435 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms