RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MSLNQ13421 630 aaPredicted RBP11.61□□□□□ -0.55
SYNE1-237ENST00000539504 R3HDM1Q15032 1099 aaKnown RBP11.61□□□□□ -0.55
SYNE1-237ENST00000539504 CNGA3Q16281 694 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ZPBP2Q6X784 338 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 EEPD1Q7L9B9 569 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 RAB3IL1Q8TBN0 382 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 APBB2Q92870 758 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 RNPEPQ9H4A4 650 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 TMEM134Q9H6X4 195 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 C15orf38-AP3S2A0A0A6YYH1 394 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 GLRA3O75311 464 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 TRPA1O75762 1119 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ATG7O95352 703 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 HSPA4LO95757 839 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ATP5BP06576 529 aaKnown RBP11.61□□□□□ -0.55
SYNE1-237ENST00000539504 CXCL8P10145 99 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 GMPRP36959 345 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 GABRB2P47870 512 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 MAP3K10Q02779 954 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ANKRD20A4Q4UJ75 823 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 STYK1Q6J9G0 422 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 RNF111Q6ZNA4 994 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ARPINQ7Z6K5 226 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 SLC4A11Q8NBS3 891 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 AZIN2Q96A70 460 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 PIWIL1Q96J94 861 aaKnown RBP11.61□□□□□ -0.55
SYNE1-237ENST00000539504 LRGUKQ96M69 825 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 DHX35Q9H5Z1 703 aaKnown RBP11.61□□□□□ -0.55
SYNE1-237ENST00000539504 NRDE2Q9H7Z3 1164 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 BTBD7Q9P203 1132 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 HMX2A2RU54 273 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ITGB3P05106 788 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 GRIA2P42262 883 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 IDH3AP50213 366 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 EFNA5P52803 228 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PPM1JQ5JR12 505 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 CDKL3Q8IVW4 592 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PHTF2Q8N3S3 785 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 LRRC39Q96DD0 335 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 TMEM176AQ96HP8 235 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 DNAJC1Q96KC8 554 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF778Q96MU6 729 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ELOVL4Q9GZR5 314 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 XYLT2Q9H1B5 865 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 RPF1Q9H9Y2 349 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ARHGAP26Q9UNA1 814 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 CCNT2O60583 730 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 CLPTM1O96005 669 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 C1QAP02745 245 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SPATA31D3P0C874 917 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PABPC4LP0CB38 370 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 RALBP11234 206 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ADORA2AP29274 412 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PMLP29590 882 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SDC4P31431 198 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 STAT5BP51692 787 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SH3BGRP55822 239 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 BTKQ06187 659 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 USP4Q13107 963 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 LSAMPQ13449 338 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 CA9Q16790 459 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 OLFML2BQ68BL8 750 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 MBLAC2Q68D91 279 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 IYDQ6PHW0 289 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SPATA31D4Q6ZUB0 917 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 FRMD7Q6ZUT3 714 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ADGRG6Q86SQ4 1221 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PCDH19Q8TAB3 1148 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PGBD4Q96DM1 585 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SIGLEC10Q96LC7 697 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 CNBD2Q96M20 576 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 KCNK16Q96T55 309 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ACO2Q99798 780 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 Q9H521 79 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 XPNPEP3Q9NQH7 507 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 DDX18Q9NVP1 670 aaKnown RBP11.6□□□□□ -0.55
SYNE1-237ENST00000539504 SEPT10Q9P0V9 454 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 APPL1Q9UKG1 709 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 ITGA11Q9UKX5 1188 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 PCDHA11Q9Y5I1 949 aa11.6□□□□□ -0.55
SYNE1-237ENST00000539504 GOLGA8QA0A0J9YX86 632 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 GOLGA8OA6NCC3 632 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 FAM159BA6NKW6 160 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 SPATA31C2B4DYI2 1134 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 GOLGA8NF8WBI6 632 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 NEMP1O14524 444 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PFDN1O60925 122 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 HOXC6P09630 235 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 FGF3P11487 239 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 MSX2P35548 267 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 SERPINB5P36952 375 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ALDH1A3P47895 512 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 HNRNPDQ14103 355 aaKnown RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ACAP1Q15027 740 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 STXBP2Q15833 593 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 BOLA3Q53S33 107 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 HEATR6Q6AI08 1181 aaKnown RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 CES3Q6UWW8 571 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 RBM44Q6ZP01 1051 aaKnown RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 FAM183BPQ6ZVS7 135 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms