RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 MAPK13O15264 365 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 C1RP00736 705 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 CDC25CP30307 473 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 CNGA2Q16280 664 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ZCWPW2Q504Y3 356 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 CDKAL1Q5VV42 579 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 SLFN11Q7Z7L1 901 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TTC7BQ86TV6 843 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ZNF598Q86UK7 904 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 MYLK4Q86YV6 388 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 BBS7Q8IWZ6 715 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 PHOSPHO2Q8TCD6 241 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 MRFAP1L1Q96HT8 127 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 RUFY1Q96T51 708 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 GTPBP2Q9BX10 602 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 SEZ6LQ9BYH1 1024 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ZDHHC6Q9H6R6 413 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 SMYD2Q9NRG4 433 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 AP4E1Q9UPM8 1137 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 PIRO00625 290 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 PAPSS1O43252 624 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 ARSAP15289 507 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 DSC3Q14574 896 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 PON2Q15165 354 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 PARM1Q6UWI2 310 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TADA2BQ86TJ2 420 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 BBS5Q8N3I7 341 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ATP6V0D2Q8N8Y2 350 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TC2NQ8N9U0 490 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 DQX1Q8TE96 717 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 ZSWIM3Q96MP5 696 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 UHRF1Q96T88 793 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 PAIP2Q9BPZ3 127 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 FSD1LQ9BXM9 530 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 XYLT2Q9H1B5 865 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 CWH43Q9H720 699 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 POPDC2Q9HBU9 364 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 FAM86C1Q9NVL1 165 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 SPATA6Q9NWH7 488 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 UXTQ9UBK9 157 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 CAPN11Q9UMQ6 739 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ALG6Q9Y672 507 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 NUMBLQ9Y6R0 609 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ABCA7Q8IZY2 2146 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3DA0A087WVF3 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3IA0A087WXS9 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3EA0A087X179 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3KA0A087X1G2 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ESYT3A0FGR9 886 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 FRMD3A2A2Y4 597 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3FA6NER0 549 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3LB9A6J9 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 H3BNC9 293 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 RTN2O75298 545 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 RNASEH2AO75792 299 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 RTN3O95197 1032 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 UQCRHP07919 91 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3HP0C7X1 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 RHOAP61586 193 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 FAM187BQ17R55 369 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 RASIP1Q5U651 963 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 NAIF1Q69YI7 327 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3GQ6DHY5 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3CQ6IPX1 549 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 ARHGEF18Q6ZSZ5 1173 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 MON1AQ86VX9 555 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TBC1D3Q8IZP1 549 aaPredicted RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 CFAP61Q8NHU2 1237 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 BPIFB1Q8TDL5 484 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 SREK1Q8WXA9 508 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 DMAC2Q9NW81 257 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 TXNDC16Q9P2K2 825 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 DNMT3BQ9UBC3 853 aaKnown RBP7.5□□□□□ -1.21
MSH6-209ENST00000538136 SCINQ9Y6U3 715 aa7.5□□□□□ -1.21
MSH6-209ENST00000538136 MCF2LO15068 1137 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 LZTS3O60299 673 aaPredicted RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 CLASP2O75122 1294 aaKnown RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 STK10O94804 968 aaKnown RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 SETSIPP0DME0 302 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 MAOBP27338 520 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 MIPP30301 263 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 ACADSBP45954 432 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 GCNT1Q02742 428 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 POU5F1BQ06416 359 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 HYAL1Q12794 435 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 SPARCL1Q14515 664 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 DNAJC21Q5F1R6 531 aaKnown RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 ACAD10Q6JQN1 1059 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 TMCO3Q6UWJ1 677 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 TAC4Q86UU9 113 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 TMEM25Q86YD3 366 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 UCMAQ8WVF2 138 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 PIK3R5Q8WYR1 880 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 XPO6Q96QU8 1125 aaKnown RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 KRT12Q99456 494 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 OMDQ99983 421 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 DDX47Q9H0S4 455 aaKnown RBP7.49□□□□□ -1.21
MSH6-209ENST00000538136 EPC1Q9H2F5 836 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 OSGEPL1Q9H4B0 414 aa7.49□□□□□ -1.21
MSH6-209ENST00000538136 GMEB2Q9UKD1 530 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms