RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CPT1BQ92523 772 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 FAF2Q96CS3 445 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 RMDN2Q96LZ7 410 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MAK16Q9BXY0 300 aaKnown RBP11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MTMR10Q9NXD2 777 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 DDX43Q9NXZ2 648 aaKnown RBP11.15□□□□□ -0.62
CLIP1-210ENST00000538120 TIMM13Q9Y5L4 95 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-210ENST00000538120 RPLP2P05387 115 aaKnown RBP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 NPR3P17342 541 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 L1CAMP32004 1257 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 NDUFV1P49821 464 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 RABGGTBP53611 331 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 NOGQ13253 232 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 PTK7Q13308 1070 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 TFDP2Q14188 446 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 FASTKD3Q14CZ7 662 aaKnown RBP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 UPP1Q16831 310 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 FAM26DQ5JW98 314 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 FAM182AQ5T1J6 154 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 OTUD1Q5VV17 481 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 SLC9A4Q6AI14 798 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CGB2Q6NT52 195 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 C1orf228Q6PIY5 440 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CLEC20AQ6ZU45 233 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 TAOK1Q7L7X3 1001 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 HACE1Q8IYU2 909 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 NAT8LQ8N9F0 302 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 RSAD2Q8WXG1 361 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 KCTD13Q8WZ19 329 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 NSRP1Q9H0G5 558 aaKnown RBP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 SAYSD1Q9NPB0 183 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 TBK1Q9UHD2 729 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 TCRBV7S3A2A0A539 114 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 MYBPHLA2RUH7 354 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CFAP73A6NFT4 308 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CASTOR2A6NHX0 329 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 MCF2LO15068 1137 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CTCFP49711 727 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 MGAT5Q09328 741 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 ADIGQ0VDE8 80 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 RIPK1Q13546 671 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 ITGA7Q13683 1181 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 VSIG1Q86XK7 387 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 MAP7D3Q8IWC1 876 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 DEFB106AQ8N104 65 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 CCDC185Q8N715 623 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 SERPINB12Q96P63 405 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 RTP3Q9BQQ7 232 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 DNAI2Q9GZS0 605 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 USP29Q9HBJ7 922 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 TMEM30AQ9NV96 361 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLIP1-210ENST00000538120 SRRDQ9UH36 339 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 SHOC2Q9UQ13 582 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 C15orf41Q9Y2V0 281 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 THSD7BQ9C0I4 1608 aa11.14□□□□□ -0.63
CLIP1-210ENST00000538120 A0A0U1RQF3 1178 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ALOX15BO15296 676 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 DIAPH2O60879 1101 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 RPL9P32969 192 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 MATKP42679 507 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 CACNA2D1P54289 1103 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 PITX1P78337 314 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 MRPS5P82675 430 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 BNIP1Q12981 228 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 CRYMQ14894 314 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 DPYSL2Q16555 572 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 TIGD5Q53EQ6 642 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 EFHC1Q5JVL4 640 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 BNIPLQ7Z465 357 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ZC3H18Q86VM9 953 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 TMEM86AQ8N2M4 240 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ANKLE1Q8NAG6 615 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 PCSK9Q8NBP7 692 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ZMIZ2Q8NF64 920 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 KLHL29Q96CT2 875 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ZNF570Q96NI8 536 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 KCTD15Q96SI1 283 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 SMOQ99835 787 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 SYT15Q9BQS2 421 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ZNF670Q9BS34 389 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ZNF487B1APH4 448 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 APOL1O14791 398 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ABHD2P08910 425 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 LHX1P48742 406 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ACLYP53396 1101 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 MAP3K7CLP57077 242 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ROR1Q01973 937 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 MSS51Q4VC12 460 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 C4orf46Q504U0 113 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 HP1BP3Q5SSJ5 553 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 FNBP1LQ5T0N5 605 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 DARS2Q6PI48 645 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 TRAF7Q6Q0C0 670 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 DSTYKQ6XUX3 929 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 STRADAQ7RTN6 431 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 PPIL6Q8IXY8 311 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 TAB3Q8N5C8 712 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 CD99L2Q8TCZ2 262 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ITFG2Q969R8 447 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms