RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZDHHC17Q8IUH5 632 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 GOLGA1Q92805 767 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 NT5C3BQ969T7 300 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 EXOC4Q96A65 974 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 FAM149B1Q96BN6 582 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 FCRL2Q96LA5 508 aaPredicted RBP13.53□□□□□ -0.24
VPS28-216ENST00000533806 PNKPQ96T60 521 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 TLR6Q9Y2C9 796 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 CEP83Q9Y592 693 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 CACNA1IQ9P0X4 2223 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 USP34Q70CQ2 3546 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 K7ESF4 209 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 TRIM24O15164 1050 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 IRAK2O43187 625 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 LAMTOR5O43504 91 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 HSF2BPO75031 334 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 RNF40O75150 1001 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 KAT7O95251 611 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 SERPINC1P01008 464 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 TYRP14679 529 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 MMP8P22894 467 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 GRIA2P42262 883 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 KIR2DL1P43626 348 aaPredicted RBP13.52□□□□□ -0.25
VPS28-216ENST00000533806 HARS2P49590 506 aaKnown RBP13.52□□□□□ -0.25
VPS28-216ENST00000533806 TBX4P57082 545 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 SNX16P57768 344 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 PTP4A2Q12974 167 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 ADGRF1Q5T601 910 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 TPGS1Q6ZTW0 290 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 TAC4Q86UU9 113 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 DEFB106AQ8N104 65 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 CPA5Q8WXQ8 436 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 C18orf8Q96DM3 657 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 SERPINB11Q96P15 392 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 BBS2Q9BXC9 721 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 ADAM33Q9BZ11 813 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 EDEM3Q9BZQ6 932 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 AIPL1Q9NZN9 384 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 HCN2Q9UL51 889 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 PIEZO1Q92508 2521 aa13.52□□□□□ -0.25
VPS28-216ENST00000533806 FRYLO94915 3013 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ZFHX2Q9C0A1 2572 aaPredicted RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 MIA3Q5JRA6 1907 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 PROB1E7EW31 1015 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 NEDD8-MDP1E9PL57 170 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TRUB2O95900 331 aaKnown RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 HOXA6P31267 233 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 PLA2G5P39877 138 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 NBL1P41271 181 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TNFRSF4P43489 277 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 CXCL12P48061 93 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 CCR3P51677 355 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 UBASH3AP57075 661 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ZNF445P59923 1031 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TPM4P67936 248 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 SATB1Q01826 763 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ANO4Q32M45 955 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 C2CD6Q53TS8 623 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 DCAF6Q58WW2 860 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 FAM133BQ5BKY9 247 aaKnown RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 OTUD1Q5VV17 481 aaPredicted RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 NAA35Q5VZE5 725 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 E4F1Q66K89 784 aaPredicted RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 NUGGCQ68CJ6 796 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 OR6B2Q6IFH4 312 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TRIM72Q6ZMU5 477 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TOGARAM2Q6ZUX3 1019 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ARCQ7LC44 396 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 CACNA2D4Q7Z3S7 1137 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ERICH1Q86X53 443 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 UNC45BQ8IWX7 931 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 NAT16Q8N8M0 369 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 ADAM32Q8TC27 787 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 IPO4Q8TEX9 1081 aaKnown RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 USP33Q8TEY7 942 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 PHOX2BQ99453 314 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 IRX2Q9BZI1 471 aaPredicted RBP13.51□□□□□ -0.25
VPS28-216ENST00000533806 PDCL3Q9H2J4 239 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TSPY26PQ9H489 355 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 CALCOCO1Q9P1Z2 691 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 DEC1Q9P2X7 70 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 TMEM59LQ9UK28 342 aa13.51□□□□□ -0.25
VPS28-216ENST00000533806 LRRC53A6NM62 1247 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 KCNU1A8MYU2 1149 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 GOLGA6L19H0YKK7 550 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 CAPN9O14815 690 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 DAB1O75553 588 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 GRAP2O75791 330 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 FERP16591 822 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 HOXC13P31276 330 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 NOS2P35228 1153 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 MATKP42679 507 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 CENPCQ03188 943 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 ARID5AQ03989 594 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 CSTF1Q05048 431 aaKnown RBP13.5□□□□□ -0.25
VPS28-216ENST00000533806 CLEC16AQ2KHT3 1053 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 NADSYN1Q6IA69 706 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 TRNP1Q6NT89 227 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 TSSK4Q6SA08 328 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms