RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SYT11Q9BT88 431 aa20.7■□□□□ 0.9
CPSF1-209ENST00000532725 XPO4Q9C0E2 1151 aaKnown RBP20.7■□□□□ 0.9
CPSF1-209ENST00000532725 WDR35Q9P2L0 1181 aa20.7■□□□□ 0.9
CPSF1-209ENST00000532725 TRUB2O95900 331 aaKnown RBP20.69■□□□□ 0.9
CPSF1-209ENST00000532725 MMP8P22894 467 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 SCNN1AP37088 669 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 PITX1P78337 314 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-209ENST00000532725 MESP2Q0VG99 397 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 NNTQ13423 1086 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 TAC4Q86UU9 113 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 UNC45BQ8IWX7 931 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 MAML2Q8IZL2 1156 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-209ENST00000532725 CPXM2Q8N436 756 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 NAT16Q8N8M0 369 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 SLC30A5Q8TAD4 765 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 AZIN2Q96A70 460 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 FCRL2Q96LA5 508 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-209ENST00000532725 SERPINB11Q96P15 392 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 PNKPQ96T60 521 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 SPATA6Q9NWH7 488 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-209ENST00000532725 TLR6Q9Y2C9 796 aa20.69■□□□□ 0.9
CPSF1-209ENST00000532725 K7EQS6 105 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 GFRA2O00451 464 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 LATS1O95835 1130 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 ANGPT1Q15389 498 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 CLEC16AQ2KHT3 1053 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 ADGRF1Q5T601 910 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 SFMBT2Q5VUG0 894 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 E4F1Q66K89 784 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-209ENST00000532725 NUGGCQ68CJ6 796 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 Q6ZS52 159 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 PHTF2Q8N3S3 785 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 MSANTD4Q8NCY6 345 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 OLIG1Q8TAK6 271 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 IER2Q9BTL4 223 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 BBS2Q9BXC9 721 aa20.68■□□□□ 0.9
CPSF1-209ENST00000532725 A0A1W2PQJ5 194 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 NEDD8-MDP1E9PL57 170 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 H0Y858 1186 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 TULP3O75386 442 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 PENKP01210 267 aaPredicted RBP20.67■□□□□ 0.9
CPSF1-209ENST00000532725 TYRP14679 529 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 NOS2P35228 1153 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 CDK17Q00537 523 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 CENPCQ03188 943 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 PTP4A2Q12974 167 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 FBXO43Q4G163 708 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 FYB2Q5VWT5 728 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 MMS22LQ6ZRQ5 1243 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 SPEM1Q8N4L4 309 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 TMEM59LQ9UK28 342 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 FBXO10Q9UK96 956 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 CAPN11Q9UMQ6 739 aa20.67■□□□□ 0.9
CPSF1-209ENST00000532725 TRIM24O15164 1050 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 IRAK2O43187 625 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 CACNG3O60359 315 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 DAB1O75553 588 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 KAT7O95251 611 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 CISD3P0C7P0 127 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 PRKCIP41743 596 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 GRIA2P42262 883 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 MATKP42679 507 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 PTPN5P54829 565 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 RNASE9P60153 205 aaKnown RBP20.66■□□□□ 0.9
CPSF1-209ENST00000532725 ASIC2Q16515 512 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 ZC3H12AQ5D1E8 599 aaKnown RBP20.66■□□□□ 0.9
CPSF1-209ENST00000532725 ARCQ7LC44 396 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 PHF13Q86YI8 300 aaPredicted RBP20.66■□□□□ 0.9
CPSF1-209ENST00000532725 SFTPA1Q8IWL2 248 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 NT5C3BQ969T7 300 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 XPO6Q96QU8 1125 aaKnown RBP20.66■□□□□ 0.9
CPSF1-209ENST00000532725 HAUS4Q9H6D7 363 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 PLK2Q9NYY3 685 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.66■□□□□ 0.9
CPSF1-209ENST00000532725 DEC1Q9P2X7 70 aa20.66■□□□□ 0.9
CPSF1-209ENST00000532725 GOLGA6L7A0A1B0GV03 622 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ANTXRLA6NF34 631 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-209ENST00000532725 LAMTOR5O43504 91 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ACSL4O60488 711 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 RNF40O75150 1001 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 TNFAIP3P21580 790 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 GBP1P32455 592 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 SLC11A2P49281 568 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 FAM102AQ5T9C2 384 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-209ENST00000532725 PKN3Q6P5Z2 889 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ZNF571Q7Z3V5 609 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-209ENST00000532725 CPLX3Q8WVH0 158 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 SYN2Q92777 582 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-209ENST00000532725 BHMTQ93088 406 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 IQCDQ96DY2 449 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 NPY6RQ99463 290 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ARHGEF4Q9NR80 690 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 C2orf42Q9NWW7 574 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ATG2BQ96BY7 2078 aa20.65■□□□□ 0.9
CPSF1-209ENST00000532725 ITIH6Q6UXX5 1313 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 KCNU1A8MYU2 1149 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 CHURC1-FNTBB4DL54 471 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 GOLGA8SH3BPF8 625 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 CBFA2T2O43439 604 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms