RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC6A3Q01959 620 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 TAF5Q15542 800 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 FIGNQ5HY92 759 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 SYPL2Q5VXT5 272 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 NAA35Q5VZE5 725 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 Q6ZS52 159 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 TPGS1Q6ZTW0 290 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 TAC4Q86UU9 113 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 ERICH1Q86X53 443 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 UNC45BQ8IWX7 931 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 MAML2Q8IZL2 1156 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-208ENST00000532560 CCDC26Q8TAB7 109 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 EZH1Q92800 747 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-208ENST00000532560 C18orf8Q96DM3 657 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 PNKPQ96T60 521 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 BBS2Q9BXC9 721 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 FBXO4Q9UKT5 387 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 TLR6Q9Y2C9 796 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 NEDD8-MDP1E9PL57 170 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 H0Y858 1186 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 IRAK2O43187 625 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 TULP3O75386 442 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 PAPSS2O95340 614 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-208ENST00000532560 PENKP01210 267 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-208ENST00000532560 TYRP14679 529 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 GRIA2P42262 883 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 CCR3P51677 355 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 ARID5AQ03989 594 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 PREPLQ4J6C6 727 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-208ENST00000532560 DCAF6Q58WW2 860 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 XYLT1Q86Y38 959 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 CPA5Q8WXQ8 436 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 SLC39A13Q96H72 371 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 FCRL2Q96LA5 508 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-208ENST00000532560 XPO6Q96QU8 1125 aaKnown RBP15.66■□□□□ 0.1
CPSF1-208ENST00000532560 EDEM3Q9BZQ6 932 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 WDFY4Q6ZS81 3184 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 CACNA1IQ9P0X4 2223 aa15.66■□□□□ 0.1
CPSF1-208ENST00000532560 A0A0A0MRY4 1105 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 LRRC53A6NM62 1247 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 CHURC1-FNTBB4DL54 471 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 GFRA2O00451 464 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 RNF40O75150 1001 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 GRAP2O75791 330 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 KAT7O95251 611 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 TRUB2O95900 331 aaKnown RBP15.65■□□□□ 0.1
CPSF1-208ENST00000532560 APODP05090 189 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 UNGP13051 313 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-208ENST00000532560 MMP8P22894 467 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 SLC6A11P48066 632 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 CDK17Q00537 523 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 NHLH1Q02575 133 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 CENPCQ03188 943 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 KDSRQ06136 332 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 EIF4EBP2Q13542 120 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-208ENST00000532560 PPP2R5DQ14738 602 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 ZNF528Q3MIS6 628 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 ADGRF1Q5T601 910 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 FYB2Q5VWT5 728 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 DEFB106AQ8N104 65 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 ADAM32Q8TC27 787 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 AZIN2Q96A70 460 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 IQCDQ96DY2 449 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 FAM122AQ96E09 287 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 PCDHB18PQ96TA0 734 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 NUP58Q9BVL2 599 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 ARHGEF4Q9NR80 690 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 IFNKQ9P0W0 207 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 DEC1Q9P2X7 70 aa15.65■□□□□ 0.1
CPSF1-208ENST00000532560 A0A1W2PQJ5 194 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 K7EQS6 105 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 ATG13O75143 517 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 CYBBP04839 570 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 TPM3P06753 285 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 SP9P0CG40 484 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 TDGF1P13385 188 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 NOS2P35228 1153 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 NSFP46459 744 aaKnown RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 SLC11A2P49281 568 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 GSCP56915 257 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 PITX1P78337 314 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 SATB1Q01826 763 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 MESP2Q0VG99 397 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 CLEC16AQ2KHT3 1053 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 FAM102AQ5T9C2 384 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 GRAMD4Q6IC98 578 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 MMS22LQ6ZRQ5 1243 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 IRF2BP2Q7Z5L9 587 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 NAT16Q8N8M0 369 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 TERB1Q8NA31 727 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 ATOH1Q92858 354 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 ACDQ96AP0 544 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 P2RY11Q96G91 374 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 AGPAT1Q99943 283 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 SYT11Q9BT88 431 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 IRX2Q9BZI1 471 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 FAM204AQ9H8W3 233 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 DNAJC17Q9NVM6 304 aaKnown RBP15.64■□□□□ 0.09
CPSF1-208ENST00000532560 RRN3Q9NYV6 651 aa15.64■□□□□ 0.09
CPSF1-208ENST00000532560 AIPL1Q9NZN9 384 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms