RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ATG7O95352 703 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 MYLK3Q32MK0 819 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 IER5Q5VY09 327 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 TMEM192Q8IY95 271 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 PPM1NQ8N819 430 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 C7orf26Q96N11 449 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 ZNF112Q9UJU3 913 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 INPP5FQ9Y2H2 1132 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 KLF11O14901 512 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 IL1R2P27930 398 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 EMP3P54852 163 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 RABGAP1LQ5R372 815 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 AAGABQ6PD74 315 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 PDIK1LQ8N165 341 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 CLMNQ96JQ2 1002 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 RPF1Q9H9Y2 349 aaKnown RBP14.68□□□□□ -0.06
USP48-213ENST00000529637 APPL1Q9UKG1 709 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 LZTS1Q9Y250 596 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 PLLPQ9Y342 182 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 HBS1LQ9Y450 684 aaKnown RBP14.68□□□□□ -0.06
USP48-213ENST00000529637 PPME1Q9Y570 386 aa14.68□□□□□ -0.06
USP48-213ENST00000529637 LOC100653049A0A140TA62 436 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 SOWAHBA6NEL2 793 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 SDR42E2A6NKP2 422 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 GRAP2O75791 330 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 KRT34O76011 436 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 CLPTM1O96005 669 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 DESP17661 470 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 PMLP29590 882 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 ICAM3P32942 547 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 YWHAEP62258 255 aaKnown RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 TAP1Q03518 808 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 TAF5Q15542 800 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 LRRC38Q5VT99 294 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 METTL7BQ6UX53 244 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 B3GNT6Q6ZMB0 384 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 NUDCD3Q8IVD9 361 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 CEP70Q8NHQ1 597 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 FER1L6Q2WGJ9 1857 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 A0A1B0GTW7 788 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 H3BNX3 289 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 M0QYV0 167 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 LRCH4O75427 683 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 MAP3K6O95382 1288 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 IL1BP01584 269 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 SERPINA6P08185 405 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 KRT7P08729 469 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 CD1EP15812 388 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 EIF4BP23588 611 aaKnown RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 EIF3EP60228 445 aaKnown RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 MXD4Q14582 209 aaPredicted RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 TARBP2Q15633 366 aaKnown RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 FAM102AQ5T9C2 384 aaPredicted RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 SCYL2Q6P3W7 929 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 C1orf228Q6PIY5 440 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 ATG14Q6ZNE5 492 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 ZNF513Q8N8E2 541 aaPredicted RBP14.67□□□□□ -0.06
USP48-213ENST00000529637 UBA3Q8TBC4 463 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 CFAP36Q96G28 342 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 ZNF778Q96MU6 729 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 SPATA33Q96N06 139 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 CPXM1Q96SM3 734 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 C1orf21Q9H246 121 aa14.67□□□□□ -0.06
USP48-213ENST00000529637 ITM2AO43736 263 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ADARP55265 1226 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 IYDQ6PHW0 289 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 COPS5Q92905 334 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 FAM167AQ96KS9 214 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 HEXIM2Q96MH2 286 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 ZNF518BQ9C0D4 1074 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 R3HDMLQ9H3Y0 253 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 POMPQ9Y244 141 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 TDRKHQ9Y2W6 561 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 GMEB1Q9Y692 573 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 MCF2LO15068 1137 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 MED7O43513 233 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ITGB3P05106 788 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 RBP3P10745 1247 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 RPL5P46777 297 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 PLOD1Q02809 727 aaPredicted RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 TUBB3Q13509 450 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SURF1Q15526 300 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 DARS2Q6PI48 645 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 MPZL3Q6UWV2 235 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 RSPH3Q86UC2 560 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 RIN3Q8TB24 985 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 GAB3Q8WWW8 586 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SPATC1LQ9H0A9 340 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 RBM38Q9H0Z9 239 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 CDH22Q9UJ99 828 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 CPSF3Q9UKF6 684 aaKnown RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 TTC36A6NLP5 189 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ARIH2O95376 493 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ITGBL1O95965 494 aaPredicted RBP14.66□□□□□ -0.06
USP48-213ENST00000529637 C1QAP02745 245 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 HNRNPCP07910 306 aaKnown RBP eCLIP14.66□□□□□ -0.064e-6■■■□□ 17
USP48-213ENST00000529637 HOXC6P09630 235 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 ASPAP45381 313 aa14.66□□□□□ -0.06
USP48-213ENST00000529637 SNAPC2Q13487 334 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms