RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 INTS8Q75QN2 995 aaKnown RBP24.74■■□□□ 1.55
CPSF1-202ENST00000527827 CDK5RAP1Q96SZ6 601 aaKnown RBP24.74■■□□□ 1.55
CPSF1-202ENST00000527827 DCLK3Q9C098 648 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 AGO1Q9UL18 857 aaKnown RBP24.74■■□□□ 1.55
CPSF1-202ENST00000527827 MYL1P05976 194 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 NCAM1P13591 858 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 NR2F2P24468 414 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 RING1Q06587 406 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 ZNF394Q53GI3 561 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 NAXDQ8IW45 347 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 RBBP8NLQ8NC74 664 aaPredicted RBP24.73■■□□□ 1.55
CPSF1-202ENST00000527827 GPR174Q9BXC1 333 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 MMRN2Q9H8L6 949 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 USP25Q9UHP3 1055 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 CLEC4EQ9ULY5 219 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 HPSEQ9Y251 543 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 NFE2L3Q9Y4A8 694 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 ANKRD11Q6UB99 2663 aaPredicted RBP24.73■■□□□ 1.55
CPSF1-202ENST00000527827 PLXNB3Q9ULL4 1909 aa24.73■■□□□ 1.55
CPSF1-202ENST00000527827 A0A1B0GTW7 788 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 MEI4A8MW99 385 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 CMA1P23946 247 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 TPMTP51580 245 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 TMPRSS6Q8IU80 811 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 FAM186BQ8IYM0 893 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 CADM4Q8NFZ8 388 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 UCMAQ8WVF2 138 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 ZDHHC5Q9C0B5 715 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 FREM2Q5SZK8 3169 aa24.72■■□□□ 1.55
CPSF1-202ENST00000527827 PRR29P0C7W0 189 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 FTH1P19P0C7X4 201 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 COPAP53621 1224 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ENPEPQ07075 957 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ZNF234Q14588 700 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 LRSAM1Q6UWE0 723 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ANKS1BQ7Z6G8 1248 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 DENND1CQ8IV53 801 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ZCCHC9Q8N567 271 aaKnown RBP24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ADAMTS14Q8WXS8 1223 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 SEMA4DQ92854 862 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 HEXIM2Q96MH2 286 aaKnown RBP24.71■■□□□ 1.55
CPSF1-202ENST00000527827 TMEM8AQ9HCN3 771 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 ELOVL2Q9NXB9 296 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 MAPK8IP1Q9UQF2 711 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 PCDHB9Q9Y5E1 797 aa24.71■■□□□ 1.55
CPSF1-202ENST00000527827 RHOBTB3O94955 611 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 IGLV3-19P01714 112 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 KRT13P13646 458 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 PRKCHP24723 683 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 MCCD1P59942 119 aaPredicted RBP24.7■■□□□ 1.54
CPSF1-202ENST00000527827 COL9A2Q14055 689 aaPredicted RBP24.7■■□□□ 1.54
CPSF1-202ENST00000527827 RAB41Q5JT25 222 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 DCAF12L1Q5VU92 463 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 TMEM215Q68D42 235 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 CPXM2Q8N436 756 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 PNPLA1Q8N8W4 532 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 SLC4A11Q8NBS3 891 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 SIPA1Q96FS4 1042 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 UBXN6Q9BZV1 441 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 MARCH2Q9P0N8 246 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 LHX6Q9UPM6 363 aa24.7■■□□□ 1.54
CPSF1-202ENST00000527827 METTL12A8MUP2 240 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 SYNCRIPO60506 623 aaKnown RBP24.69■■□□□ 1.54
CPSF1-202ENST00000527827 CBFA2T3O75081 653 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 OXTRP30559 389 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 PSMC2P35998 433 aaKnown RBP24.69■■□□□ 1.54
CPSF1-202ENST00000527827 RAD23BP54727 409 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 BNC1Q01954 994 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 NUMA1Q14980 2115 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 PIGZQ86VD9 579 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 PROSER1Q86XN7 944 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 FAM217AQ8IXS0 508 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 ARHGAP18Q8N392 663 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 CCDC150Q8NCX0 1101 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 SORCS1Q8WY21 1168 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 PRCCQ92733 491 aaPredicted RBP24.69■■□□□ 1.54
CPSF1-202ENST00000527827 DNAI2Q9GZS0 605 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 MIR1-1HGQ9H1L0 117 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 IL21RQ9HBE5 538 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 PTPRBP23467 1997 aa24.69■■□□□ 1.54
CPSF1-202ENST00000527827 KNL1Q8NG31 2342 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 SLC12A8A0AV02 714 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 CYBBP04839 570 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 YWHAGP61981 247 aaKnown RBP eCLIP24.68■■□□□ 1.54
CPSF1-202ENST00000527827 EIF4HQ15056 248 aaKnown RBP24.68■■□□□ 1.54
CPSF1-202ENST00000527827 KRT39Q6A163 491 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 TMEM176AQ96HP8 235 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 FAXDC2Q96IV6 333 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 SLC2A11Q9BYW1 496 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 CIPCQ9C0C6 399 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 CISHQ9NSE2 258 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 PCOLCE2Q9UKZ9 415 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 STRIP2Q9ULQ0 834 aa24.68■■□□□ 1.54
CPSF1-202ENST00000527827 HSP90AA1P07900 732 aaKnown RBP24.67■■□□□ 1.54
CPSF1-202ENST00000527827 GTF2H1P32780 548 aa24.67■■□□□ 1.54
CPSF1-202ENST00000527827 SCAPQ12770 1279 aa24.67■■□□□ 1.54
CPSF1-202ENST00000527827 DPYDQ12882 1025 aa24.67■■□□□ 1.54
CPSF1-202ENST00000527827 ADAM9Q13443 819 aa24.67■■□□□ 1.54
CPSF1-202ENST00000527827 ZCWPW2Q504Y3 356 aa24.67■■□□□ 1.54
CPSF1-202ENST00000527827 ARHGAP17Q68EM7 881 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms