RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MYRFLQ96LU7 910 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 SAMD11Q96NU1 681 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 FRMD8P1Q9BZ68 369 aaPredicted RBP21.82■■□□□ 1.08
VPS28-208ENST00000527797 MAGEB5Q9BZ81 275 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 TKTL2Q9H0I9 626 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 TMPRSS4Q9NRS4 437 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 ARGLU1Q9NWB6 273 aaPredicted RBP21.82■■□□□ 1.08
VPS28-208ENST00000527797 RCOR3Q9P2K3 495 aaPredicted RBP21.82■■□□□ 1.08
VPS28-208ENST00000527797 FEZ2Q9UHY8 353 aaPredicted RBP21.82■■□□□ 1.08
VPS28-208ENST00000527797 C2orf71A6NGG8 1288 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 HMGA1P17096 107 aaKnown RBP21.81■■□□□ 1.08
VPS28-208ENST00000527797 CCR1P32246 355 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 KCNJ1P48048 391 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 VSNL1P62760 191 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 GUCY2DQ02846 1103 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 LILRA6Q6PI73 481 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 IFT20Q8IY31 132 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 ATL2Q8NHH9 583 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 GRK7Q8WTQ7 553 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 ZNF512Q96ME7 567 aaPredicted RBP21.81■■□□□ 1.08
VPS28-208ENST00000527797 TGS1Q96RS0 853 aaKnown RBP21.81■■□□□ 1.08
VPS28-208ENST00000527797 RASAL2Q9UJF2 1139 aa21.81■■□□□ 1.08
VPS28-208ENST00000527797 H3BRJ5 948 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 APOC4-APOC2K7ER74 178 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 APOL1O14791 398 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ZMYND10O75800 440 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 APOC2P02655 101 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 SPATA31D3P0C874 917 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 DNAJB1P25685 340 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 PTGIRP43119 386 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 DRICH1Q6PGQ1 229 aaPredicted RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 SPATA31D4Q6ZUB0 917 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 CCDC149Q6ZUS6 474 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 PCDH19Q8TAB3 1148 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 HAUS1Q96CS2 278 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 TRMT2BQ96GJ1 504 aaKnown RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 CSPG4P5Q96PW8 444 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 CDK5RAP1Q96SZ6 601 aaKnown RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 FAM118BQ9BPY3 351 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 HINFPQ9BQA5 517 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ANLNQ9NQW6 1124 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ARHGEF38Q9NXL2 777 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 CWC15Q9P013 229 aaKnown RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 UTP11Q9Y3A2 253 aaKnown RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 PLXNA3P51805 1871 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 MSI1O43347 362 aaKnown RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 LIASO43766 372 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ECEL1O95672 775 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ZFXP17010 805 aaPredicted RBP21.8■■□□□ 1.08
VPS28-208ENST00000527797 EFEMP1Q12805 493 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 PPP2R5DQ14738 602 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 BRD3Q15059 726 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 C10orf120Q5SQS8 335 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 SNX30Q5VWJ9 437 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 SPRED2Q7Z698 418 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 TADA2BQ86TJ2 420 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ITIH5Q86UX2 942 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 JAMLQ86YT9 394 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 ZNF276Q8N554 614 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 PQLC3Q8N755 202 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 SLCO2A1Q92959 643 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 RAB17Q9H0T7 212 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 PRDM16Q9HAZ2 1276 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 EPB41L5Q9HCM4 733 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 TLR6Q9Y2C9 796 aa21.8■■□□□ 1.08
VPS28-208ENST00000527797 HIDE1A8MVS5 230 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 CSPG5O95196 566 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 SLC2A3P11169 496 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 H2AFXP16104 143 aaPredicted RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 GOT1P17174 413 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 OTUD4Q01804 1114 aaKnown RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 LMNB2Q03252 620 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 BYSLQ13895 437 aaKnown RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 SLC9A4Q6AI14 798 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 DNAJB7Q7Z6W7 309 aaPredicted RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 ACTL9Q8TC94 416 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 P3H4Q92791 437 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 CCDC114Q96M63 670 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 GDF3Q9NR23 364 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 TRPM5Q9NZQ8 1165 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 UXTQ9UBK9 157 aaPredicted RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 DRG1Q9Y295 367 aaKnown RBP21.79■■□□□ 1.08
VPS28-208ENST00000527797 ASB3Q9Y575 518 aa21.79■■□□□ 1.08
VPS28-208ENST00000527797 ZNF840PA6NDX5 716 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 I6L893 689 aaPredicted RBP21.78■■□□□ 1.08
VPS28-208ENST00000527797 EEF2KO00418 725 aaKnown RBP21.78■■□□□ 1.08
VPS28-208ENST00000527797 GRM6O15303 877 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 CREB3O43889 395 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 GLUD1P00367 558 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 TGM2P21980 687 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 PPP3CCP48454 512 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 ZNF135P52742 658 aaPredicted RBP21.78■■□□□ 1.08
VPS28-208ENST00000527797 TBX4P57082 545 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 ERVK-21P61565 698 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 NNTQ13423 1086 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 FBXO38Q6PIJ6 1188 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 PLD5Q8N7P1 536 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 KREMEN2Q8NCW0 462 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 NKD2Q969F2 451 aaPredicted RBP21.78■■□□□ 1.08
VPS28-208ENST00000527797 PSMG2Q969U7 264 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms