RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 STAT4Q14765 748 aa6□□□□□ -1.45
CD44-225ENST00000527326 ZNF846Q147U1 533 aa6□□□□□ -1.45
CD44-225ENST00000527326 OASLQ15646 514 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 GRAMD1BQ3KR37 738 aa6□□□□□ -1.45
CD44-225ENST00000527326 ZNF568Q3ZCX4 644 aa6□□□□□ -1.45
CD44-225ENST00000527326 C5orf22Q49AR2 442 aa6□□□□□ -1.45
CD44-225ENST00000527326 TDRD12Q587J7 1177 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 ARSHQ5FYA8 562 aa6□□□□□ -1.45
CD44-225ENST00000527326 TCHHL1Q5QJ38 904 aaPredicted RBP6□□□□□ -1.45
CD44-225ENST00000527326 CLVS2Q5SYC1 327 aa6□□□□□ -1.45
CD44-225ENST00000527326 RARS2Q5T160 578 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 IER5Q5VY09 327 aa6□□□□□ -1.45
CD44-225ENST00000527326 SHEQ5VZ18 495 aa6□□□□□ -1.45
CD44-225ENST00000527326 LPCAT4Q643R3 524 aa6□□□□□ -1.45
CD44-225ENST00000527326 SLFN13Q68D06 897 aa6□□□□□ -1.45
CD44-225ENST00000527326 ITPRIPL1Q6GPH6 555 aa6□□□□□ -1.45
CD44-225ENST00000527326 TTC27Q6P3X3 843 aa6□□□□□ -1.45
CD44-225ENST00000527326 FAM171BQ6P995 826 aa6□□□□□ -1.45
CD44-225ENST00000527326 ZNF600Q6ZNG1 722 aa6□□□□□ -1.45
CD44-225ENST00000527326 LINC00299Q6ZSB3 139 aa6□□□□□ -1.45
CD44-225ENST00000527326 RRAGAQ7L523 313 aa6□□□□□ -1.45
CD44-225ENST00000527326 OTOAQ7RTW8 1153 aa6□□□□□ -1.45
CD44-225ENST00000527326 KRT77Q7Z794 578 aa6□□□□□ -1.45
CD44-225ENST00000527326 SLFN11Q7Z7L1 901 aa6□□□□□ -1.45
CD44-225ENST00000527326 C11orf96Q7Z7L8 435 aa6□□□□□ -1.45
CD44-225ENST00000527326 NLRX1Q86UT6 975 aa6□□□□□ -1.45
CD44-225ENST00000527326 SNX32Q86XE0 403 aa6□□□□□ -1.45
CD44-225ENST00000527326 ARL6IP6Q8N6S5 226 aa6□□□□□ -1.45
CD44-225ENST00000527326 ASCC1Q8N9N2 400 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 LRRC57Q8N9N7 239 aa6□□□□□ -1.45
CD44-225ENST00000527326 ADCY4Q8NFM4 1077 aa6□□□□□ -1.45
CD44-225ENST00000527326 FBXO25Q8TCJ0 367 aa6□□□□□ -1.45
CD44-225ENST00000527326 ART4Q93070 314 aa6□□□□□ -1.45
CD44-225ENST00000527326 ISOC1Q96CN7 298 aa6□□□□□ -1.45
CD44-225ENST00000527326 SLC39A13Q96H72 371 aa6□□□□□ -1.45
CD44-225ENST00000527326 TXNDC15Q96J42 360 aa6□□□□□ -1.45
CD44-225ENST00000527326 CNDP2Q96KP4 475 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 CEP170P1Q96L14 293 aa6□□□□□ -1.45
CD44-225ENST00000527326 FAM20AQ96MK3 541 aa6□□□□□ -1.45
CD44-225ENST00000527326 SAMD11Q96NU1 681 aa6□□□□□ -1.45
CD44-225ENST00000527326 ALPK1Q96QP1 1244 aa6□□□□□ -1.45
CD44-225ENST00000527326 SNX18Q96RF0 628 aa6□□□□□ -1.45
CD44-225ENST00000527326 CDRT15Q96T59 188 aa6□□□□□ -1.45
CD44-225ENST00000527326 DOK1Q99704 481 aa6□□□□□ -1.45
CD44-225ENST00000527326 TSG101Q99816 390 aa6□□□□□ -1.45
CD44-225ENST00000527326 GON7Q9BXV9 100 aa6□□□□□ -1.45
CD44-225ENST00000527326 RBCK1Q9BYM8 510 aa6□□□□□ -1.45
CD44-225ENST00000527326 CELF4Q9BZC1 486 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 GSX2Q9BZM3 304 aa6□□□□□ -1.45
CD44-225ENST00000527326 MKRN2Q9H000 416 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 KCNN2Q9H2S1 579 aa6□□□□□ -1.45
CD44-225ENST00000527326 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6□□□□□ -1.45
CD44-225ENST00000527326 EPB41L4AQ9HCS5 686 aaPredicted RBP6□□□□□ -1.45
CD44-225ENST00000527326 JPH1Q9HDC5 661 aaPredicted RBP6□□□□□ -1.45
CD44-225ENST00000527326 MLXIPLQ9NP71 852 aa6□□□□□ -1.45
CD44-225ENST00000527326 SSU72Q9NP77 194 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 ZNF277Q9NRM2 450 aaPredicted RBP6□□□□□ -1.45
CD44-225ENST00000527326 SEPT11Q9NVA2 429 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 RIC8BQ9NVN3 520 aa6□□□□□ -1.45
CD44-225ENST00000527326 GDAP2Q9NXN4 497 aa6□□□□□ -1.45
CD44-225ENST00000527326 DNAJB12Q9NXW2 375 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 EMC3Q9P0I2 261 aa6□□□□□ -1.45
CD44-225ENST00000527326 HEY2Q9UBP5 337 aa6□□□□□ -1.45
CD44-225ENST00000527326 ASIC3Q9UHC3 531 aa6□□□□□ -1.45
CD44-225ENST00000527326 SLC7A8Q9UHI5 535 aa6□□□□□ -1.45
CD44-225ENST00000527326 ATP6V1HQ9UI12 483 aa6□□□□□ -1.45
CD44-225ENST00000527326 TAGLN3Q9UI15 199 aa6□□□□□ -1.45
CD44-225ENST00000527326 AGO2Q9UKV8 859 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 CNOT11Q9UKZ1 510 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 ARHGAP26Q9UNA1 814 aa6□□□□□ -1.45
CD44-225ENST00000527326 SIK3Q9Y2K2 1263 aa6□□□□□ -1.45
CD44-225ENST00000527326 WBP11Q9Y2W2 641 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 MRPL11Q9Y3B7 192 aaKnown RBP6□□□□□ -1.45
CD44-225ENST00000527326 AP4B1Q9Y6B7 739 aa6□□□□□ -1.45
CD44-225ENST00000527326 COL16A1Q07092 1604 aaPredicted RBP5.99□□□□□ -1.45
CD44-225ENST00000527326 MAP2P11137 1827 aaKnown RBP5.99□□□□□ -1.45
CD44-225ENST00000527326 NID2Q14112 1375 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 A0A087WXM4 84 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 CLRN2A0PK11 232 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 TRIM75PA6NK02 468 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 C2orf81A6NN90 581 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 B2RBV5 119 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 FAM25AB3EWG3 89 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 FAM25CB3EWG5 89 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 FAM25GB3EWG6 89 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 TGFBR3LH3BV60 316 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 TAF4O00268 1085 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 CCRL2O00421 344 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 SLC9A3R1O14745 358 aaPredicted RBP5.99□□□□□ -1.45
CD44-225ENST00000527326 PDPK1O15530 556 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 NDUFA2O43678 99 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 ASNA1O43681 348 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 TLR2O60603 784 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 KLHL41O60662 606 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 FAM13AO94988 1023 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 OR5F1O95221 314 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 OLFM2O95897 454 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 NTRK1P04629 796 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 CAPN1P07384 714 aa5.99□□□□□ -1.45
CD44-225ENST00000527326 ITGA4P13612 1032 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms