RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 MTA1Q13330 715 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 RAB6CQ53S08 254 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 HECTD3Q5T447 861 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 TXNRD3NBQ6F5E7 133 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 SCYL2Q6P3W7 929 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 FAM131BQ86XD5 332 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 CMASQ8NFW8 434 aaPredicted RBP13.58□□□□□ -0.24
CPNE3-205ENST00000522240 COG1Q8WTW3 980 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 MYLIPQ8WY64 445 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 RAB6CQ9H0N0 254 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 ZWILCHQ9H900 591 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 SFXN1Q9H9B4 322 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 PCSK1NQ9UHG2 260 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 METRNQ9UJH8 293 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 TTC7AQ9ULT0 858 aaPredicted RBP13.58□□□□□ -0.24
CPNE3-205ENST00000522240 TLR6Q9Y2C9 796 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 DENND4CQ5VZ89 1909 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 ANAPC1Q9H1A4 1944 aa13.58□□□□□ -0.24
CPNE3-205ENST00000522240 MYO9BQ13459 2157 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PGRMC1O00264 195 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PER2O15055 1255 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 CCL16O15467 120 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 SRGAP2O75044 1071 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RFPL2O75678 378 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ZRANB2O95218 330 aaKnown RBP eCLIP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 OLFM2O95897 454 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 OAS1P00973 400 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 IGLV3-27P01718 113 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 SRGAP2BP0DMP2 458 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RARAP10276 462 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 SLC2A3P11169 496 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 GABRR2P28476 465 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 CXCR5P32302 372 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 CETN2P41208 172 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 KPNA1P52294 538 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ATXN1P54253 815 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RING1Q06587 406 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PPP2R5DQ14738 602 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PDK2Q15119 407 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 TRIP4Q15650 581 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PPP2R5EQ16537 467 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 DPYSL2Q16555 572 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 SMTNL2Q2TAL5 461 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ARL13BQ3SXY8 428 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ODF2Q5BJF6 829 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 C10orf120Q5SQS8 335 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ERMARDQ5T6L9 678 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 TMEM184AQ6ZMB5 413 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ZNF572Q7Z3I7 529 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 TMEM150AQ86TG1 271 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RBM23Q86U06 439 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 CREG2Q8IUH2 290 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RCOR2Q8IZ40 523 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ADAM32Q8TC27 787 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 FAM71BQ8TC56 605 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ACTRT1Q8TDG2 376 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PTCD2Q8WV60 388 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 MRPS31Q92665 395 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 SLC39A13Q96H72 371 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 NAP1L3Q99457 506 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 PRKD2Q9BZL6 878 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 CCSER2Q9H7U1 834 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 ARHGEF38Q9NXL2 777 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 MARCH2Q9P0N8 246 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 RASAL2Q9UJF2 1139 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 DNMT3LQ9UJW3 386 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 FZD10Q9ULW2 581 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 AP4E1Q9UPM8 1137 aa13.57□□□□□ -0.24
CPNE3-205ENST00000522240 HBS1LQ9Y450 684 aaKnown RBP13.57□□□□□ -0.24
CPNE3-205ENST00000522240 TRANK1O15050 2925 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 SYNJ2BP-COX16A0A087WUM0 186 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 SOBPA7XYQ1 873 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 RFXAPO00287 272 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ZNF185O15231 689 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 CEP104O60308 925 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 PYGMP11217 842 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 PTPN2P17706 415 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 DDX6P26196 483 aaKnown RBP eCLIP13.56□□□□□ -0.24
CPNE3-205ENST00000522240 CCR1P32246 355 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ATP5C1P36542 298 aaKnown RBP13.56□□□□□ -0.24
CPNE3-205ENST00000522240 PAFAH1B1P43034 410 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ARSEP51690 589 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ZNF135P52742 658 aaPredicted RBP13.56□□□□□ -0.24
CPNE3-205ENST00000522240 EFEMP1Q12805 493 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 TAZQ16635 292 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 EFHC2Q5JST6 749 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ZFYVE27Q5T4F4 411 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 CCDC181Q5TID7 509 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 GAREM2Q75VX8 874 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 MAP7D3Q8IWC1 876 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 CCDC185Q8N715 623 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 EFHBQ8N7U6 833 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 HSPH1Q92598 858 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ZNF707Q96C28 371 aaPredicted RBP13.56□□□□□ -0.24
CPNE3-205ENST00000522240 CORO1BQ9BR76 489 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 ZNF670Q9BS34 389 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 WDCPQ9H6R7 721 aa13.56□□□□□ -0.24
CPNE3-205ENST00000522240 PRDM6Q9NQX0 595 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms