RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 PPP1R13BQ96KQ4 1090 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 CPXM1Q96SM3 734 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 FUCA2Q9BTY2 467 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 POPDC2Q9HBU9 364 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 DNAJC17Q9NVM6 304 aaKnown RBP13.33□□□□□ -0.28
CLCN3-210ENST00000515420 C2orf42Q9NWW7 574 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 SFMBT1Q9UHJ3 866 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 MMP17Q9ULZ9 603 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 TLR6Q9Y2C9 796 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 SLC27A6Q9Y2P4 619 aa13.33□□□□□ -0.28
CLCN3-210ENST00000515420 ZFHX2Q9C0A1 2572 aaPredicted RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 TBC1D3BA6NDS4 549 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 LSM8O95777 96 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 CAVIN2O95810 425 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 FYNP06241 537 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 PNMA6AP0CW24 399 aaPredicted RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 SCNN1AP37088 669 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 DGKGP49619 791 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 ZNF165P49910 485 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 JAM2P57087 298 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 UBXN1Q04323 297 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 KDSRQ06136 332 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 MESP2Q0VG99 397 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 DMC1Q14565 340 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 EFHC1Q5JVL4 640 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 ADGRF1Q5T601 910 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 ASCL5Q7RTU5 278 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 TRMT11Q7Z4G4 463 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 DHX40Q8IX18 779 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 NAT16Q8N8M0 369 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 SUMF1Q8NBK3 374 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 TMEM35BQ8NCS4 154 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 C1orf131Q8NDD1 294 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 EPS8L1Q8TE68 723 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 DQX1Q8TE96 717 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 DDX1Q92499 740 aaKnown RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 SLC2A11Q9BYW1 496 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 FAM207AQ9NSI2 230 aaPredicted RBP13.32□□□□□ -0.28
CLCN3-210ENST00000515420 EBF1Q9UH73 591 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 STARD13Q9Y3M8 1113 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 SPAG17Q6Q759 2223 aa13.32□□□□□ -0.28
CLCN3-210ENST00000515420 OTOGLQ3ZCN5 2332 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 EML5Q05BV3 1969 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 GFRA2O00451 464 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 CAPN9O14815 690 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 IRAK2O43187 625 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 MSI1O43347 362 aaKnown RBP13.31□□□□□ -0.28
CLCN3-210ENST00000515420 HSF2BPO75031 334 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 APBB3O95704 486 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SOX5P35711 763 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 GABRB2P47870 512 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SLC11A2P49281 568 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 TBX4P57082 545 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 POLR2FP61218 127 aaKnown RBP13.31□□□□□ -0.28
CLCN3-210ENST00000515420 E2F5Q15329 346 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SYCP1Q15431 976 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SKOR2Q2VWA4 1001 aaPredicted RBP13.31□□□□□ -0.28
CLCN3-210ENST00000515420 MPPE1Q53F39 396 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 EOGTQ5NDL2 527 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 C10orf76Q5T2E6 689 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 MPP7Q5T2T1 576 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 RNF43Q68DV7 783 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 TOGARAM2Q6ZUX3 1019 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SLC26A9Q7LBE3 791 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 PASD1Q8IV76 773 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 IL17RCQ8NAC3 791 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 MSANTD4Q8NCY6 345 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 ZNF397Q8NF99 534 aaPredicted RBP13.31□□□□□ -0.28
CLCN3-210ENST00000515420 NEK11Q8NG66 645 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SLC39A13Q96H72 371 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SLC2A13Q96QE2 648 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 SPAG5Q96R06 1193 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 DDX50Q9BQ39 737 aaKnown RBP13.31□□□□□ -0.28
CLCN3-210ENST00000515420 TMEM51Q9NW97 253 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 NAALADL1Q9UQQ1 740 aa13.31□□□□□ -0.28
CLCN3-210ENST00000515420 NPC1O15118 1278 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 IGLV3-25P01717 112 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 CISD3P0C7P0 127 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 ATP1A3P13637 1013 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 STAT1P42224 750 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 FNTBP49356 437 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 KLK7P49862 253 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 DGKEP52429 567 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 SEC13P55735 322 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 MTA1Q13330 715 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 EIF4EBP2Q13542 120 aaPredicted RBP13.3□□□□□ -0.28
CLCN3-210ENST00000515420 CRY1Q16526 586 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 PTPN20Q4JDL3 420 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 C2orf27AQ580R0 203 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 SYPL2Q5VXT5 272 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 OLFML1Q6UWY5 402 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 ZNF513Q8N8E2 541 aaPredicted RBP13.3□□□□□ -0.28
CLCN3-210ENST00000515420 ZNF557Q8N988 423 aaPredicted RBP13.3□□□□□ -0.28
CLCN3-210ENST00000515420 FCRL2Q96LA5 508 aaPredicted RBP13.3□□□□□ -0.28
CLCN3-210ENST00000515420 PDCL3Q9H2J4 239 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 SYNCQ9H7C4 482 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 RRN3Q9NYV6 651 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 TJP2Q9UDY2 1190 aa13.3□□□□□ -0.28
CLCN3-210ENST00000515420 NOCTQ9UK39 431 aaKnown RBP13.3□□□□□ -0.28
CLCN3-210ENST00000515420 SMG5Q9UPR3 1016 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms