RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 WNT16Q9UBV4 365 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 ADD3Q9UEY8 706 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 FBXO4Q9UKT5 387 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 DDX19BQ9UMR2 479 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CLCA2Q9UQC9 943 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PLIN4Q96Q06 1357 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 FOCADQ5VW36 1801 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 ADGRA3Q8IWK6 1321 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 ZNFX1Q9P2E3 1918 aaKnown RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 TRIM24O15164 1050 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 RPLP2P05387 115 aaKnown RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 IFIT2P09913 472 aaKnown RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 SRGAP2BP0DMP2 458 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 ENPP1P22413 925 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 ADD2P35612 726 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 INHBCP55103 352 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 TMPRSS15P98073 1019 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 APBA1Q02410 837 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 TROAPQ12815 778 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 TRAF1Q13077 416 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 RARS2Q5T160 578 aaKnown RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 STPG1Q5TH74 334 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 CEP85Q6P2H3 762 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 FAM180AQ6UWF9 173 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 AACSQ86V21 672 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 SAMD3Q8N6K7 520 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 MORC4Q8TE76 937 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 ZNF480Q8WV37 535 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 SEPT8Q92599 483 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 PDCD2LQ9BRP1 358 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 NACAP1Q9BZK3 213 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 SLC38A10Q9HBR0 1119 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 RAVER2Q9HCJ3 691 aaKnown RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 VTA1Q9NP79 307 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 EDARQ9UNE0 448 aa4.51□□□□□ -1.69
USP54-217ENST00000498213 COL11A1P12107 1806 aaPredicted RBP4.51□□□□□ -1.69
USP54-217ENST00000498213 A0A087X1B8 175 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 FSD2A1L4K1 749 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TMEM191CA6NGB0 347 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 GOLGA8AA7E2F4 631 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 RSPH10B2B2RC85 870 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 KALRNO60229 2985 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 RAMP2O60895 175 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 ITGA10O75578 1167 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TTLL1O95922 423 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 CFBP00751 764 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 RSPH10BP0C881 870 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 EEF2P13639 858 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 HOXB8P17481 243 aaPredicted RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 THPOP40225 353 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 MTHFRP42898 656 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 STAT2P52630 851 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 DYNLL1P63167 89 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 SLC25A3Q00325 362 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 CDK17Q00537 523 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 DPTQ07507 201 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TRIM71Q2Q1W2 868 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 DUSP28Q4G0W2 176 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 FAM83BQ5T0W9 1011 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 PLPP4Q5VZY2 271 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 NAIF1Q69YI7 327 aaPredicted RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 XRRA1Q6P2D8 792 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 KCNV1Q6PIU1 500 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TMEM184AQ6ZMB5 413 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 HTR3DQ70Z44 454 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 DOK3Q7L591 496 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 MRGPRGQ86SM5 289 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 SESTD1Q86VW0 696 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 XYLT1Q86Y38 959 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 ZNF843Q8N446 348 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 PJA1Q8NG27 643 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 SNX33Q8WV41 574 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 LARP4BQ92615 738 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 P2RX5Q93086 422 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 NECTIN4Q96NY8 510 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 NUP88Q99567 741 aaPredicted RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 WDR11Q9BZH6 1224 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 ENKD1Q9H0I2 346 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 QRSL1Q9H0R6 528 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 ACAD9Q9H845 621 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 PAG1Q9NWQ8 432 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 MAP3K20Q9NYL2 800 aaKnown RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 DPP7Q9UHL4 492 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 KLK13Q9UKR3 277 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TMPRSS11EQ9UL52 423 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.5□□□□□ -1.69
USP54-217ENST00000498213 MTF2Q9Y483 593 aaPredicted RBP4.5□□□□□ -1.69
USP54-217ENST00000498213 ATG2AQ2TAZ0 1938 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 CREBBPQ92793 2442 aa4.5□□□□□ -1.69
USP54-217ENST00000498213 TANC1Q9C0D5 1861 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 EMSYQ7Z589 1322 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ZNF532Q9HCE3 1301 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 C2CD3Q4AC94 2353 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 SIPA1L1O43166 1804 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 IGKV6D-41A0A0C4DH26 115 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 HIDE1A8MVS5 230 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 B5MCH6 92 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 F5H6K3 240 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 LRP3O75074 770 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 PHF2O75151 1096 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms