RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZFYVE19Q96K21 471 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 PPP1R9BQ96SB3 815 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 KCNF1Q9H3M0 494 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 OSGEPQ9NPF4 335 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 PIGVQ9NUD9 493 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 RRN3Q9NYV6 651 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 ANAPC7Q9UJX3 599 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 LSM7Q9UK45 103 aaKnown RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 INTUQ9ULD6 942 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 TLR6Q9Y2C9 796 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 HBS1LQ9Y450 684 aaKnown RBP12.39□□□□□ -0.43
CUX1-210ENST00000497815 WNT6Q9Y6F9 365 aa12.39□□□□□ -0.43
CUX1-210ENST00000497815 A0A0U1RQJ8 604 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 C19orf67A6NJJ6 358 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 TMEM110-MUSTN1A8MSY1 372 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 IGLV3-25P01717 112 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 KLKB1P03952 638 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 DESP17661 470 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 PSMC3P17980 439 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 CORO1AP31146 461 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 GDI1P31150 447 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 RDXP35241 583 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 PTPN9P43378 593 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 NOP2P46087 812 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 HARS2P49590 506 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 KPNA1P52294 538 aaPredicted RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 VAV2P52735 878 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 ZNF252P-AS1Q0IIN9 211 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 SND1Q7KZF4 910 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-210ENST00000497815 FAM131BQ86XD5 332 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 MFSD6LQ8IWD5 586 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 SLC44A3Q8N4M1 653 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 SLC35G2Q8TBE7 412 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 ATRIPQ8WXE1 791 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 RFFLQ8WZ73 363 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 NT5C3BQ969T7 300 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 FCRL2Q96LA5 508 aaPredicted RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 CNPY3Q9BT09 278 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 TRMT61BQ9BVS5 477 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 THG1LQ9NWX6 298 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 OBP2AQ9NY56 170 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 IGSF9Q9P2J2 1179 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 UVRAGQ9P2Y5 699 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 SSUH2Q9Y2M2 353 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 DENND4CQ5VZ89 1909 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 C5orf42Q9H799 3197 aa12.38□□□□□ -0.43
CUX1-210ENST00000497815 NUP210Q8TEM1 1887 aaPredicted RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 SPTBN5Q9NRC6 3674 aaKnown RBP12.38□□□□□ -0.43
CUX1-210ENST00000497815 E2F8A0AVK6 867 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 NARSO43776 548 aaKnown RBP12.37□□□□□ -0.43
CUX1-210ENST00000497815 GREM1O60565 184 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 F9P00740 461 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 IGLV3-27P01718 113 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 APOEP02649 317 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 CCR1P32246 355 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 IFNAR2P48551 515 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 NNTQ13423 1086 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 DAB2IPQ5VWQ8 1189 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 NUGGCQ68CJ6 796 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 TRIM68Q6AZZ1 485 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 SCYL2Q6P3W7 929 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 HTR3DQ70Z44 454 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 BBS7Q8IWZ6 715 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 RHOT2Q8IXI1 618 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 GJD3Q8N144 294 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 TTC8Q8TAM2 541 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 DEPDC1BQ8WUY9 529 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 SLC39A13Q96H72 371 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 DCLK3Q9C098 648 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 LACRTQ9GZZ8 138 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 LINC00597Q9H2U6 94 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 BRD9Q9H8M2 597 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 CD320Q9NPF0 282 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.37□□□□□ -0.431e-6■■■□□ 15.1
CUX1-210ENST00000497815 DUS2Q9NX74 493 aaKnown RBP12.37□□□□□ -0.43
CUX1-210ENST00000497815 IP6K2Q9UHH9 426 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 AGO1Q9UL18 857 aaKnown RBP12.37□□□□□ -0.43
CUX1-210ENST00000497815 ADGRG1Q9Y653 693 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 DUSP10Q9Y6W6 482 aa12.37□□□□□ -0.43
CUX1-210ENST00000497815 GOLGA6L7A0A1B0GV03 622 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 MYO1FO00160 1098 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 CCDC175P0C221 793 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 ARSAP15289 507 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 TCF3P15923 654 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 SSR1P43307 286 aaKnown RBP12.36□□□□□ -0.43
CUX1-210ENST00000497815 CXCR3P49682 368 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 VCPP55072 806 aaKnown RBP12.36□□□□□ -0.43
CUX1-210ENST00000497815 NAP1L1P55209 391 aaKnown RBP12.36□□□□□ -0.43
CUX1-210ENST00000497815 HDAC4P56524 1084 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 RING1Q06587 406 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 TNK2Q07912 1038 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 FCHO2Q0JRZ9 810 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 EIF4EBP2Q13542 120 aaPredicted RBP12.36□□□□□ -0.43
CUX1-210ENST00000497815 TDGQ13569 410 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 MESDQ14696 234 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 ARHGAP29Q52LW3 1261 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 STRADAQ7RTN6 431 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 RNF135Q8IUD6 432 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 UNC45BQ8IWX7 931 aa12.36□□□□□ -0.43
CUX1-210ENST00000497815 OSCP1Q8WVF1 389 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms