RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RAE1P78406 368 aaKnown RBP4.63□□□□□ -1.67
VPS50-219ENST00000495039 DNASE1L3Q13609 305 aa4.63□□□□□ -1.67
VPS50-219ENST00000495039 NADSYN1Q6IA69 706 aa4.63□□□□□ -1.67
VPS50-219ENST00000495039 ELP5Q8TE02 316 aa4.63□□□□□ -1.67
VPS50-219ENST00000495039 ZDHHC12Q96GR4 267 aa4.63□□□□□ -1.67
VPS50-219ENST00000495039 ACO2Q99798 780 aaKnown RBP4.63□□□□□ -1.67
VPS50-219ENST00000495039 RNF26Q9BY78 433 aaPredicted RBP4.63□□□□□ -1.67
VPS50-219ENST00000495039 PNMA8BQ9ULN7 279 aaPredicted RBP4.63□□□□□ -1.67
VPS50-219ENST00000495039 KIR2DS5A0A0G2JLQ3 304 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 FAM227AF5H4B4 570 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 H0YGN5 161 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 KIR2DS3K7RE56 304 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 INMTO95050 263 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 VPS41P49754 854 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 SUMO3P55854 103 aaPredicted RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 SMTNL2Q2TAL5 461 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 BRDTQ58F21 947 aaPredicted RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 GRHL2Q6ISB3 625 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 MAEAQ7L5Y9 396 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 RBM23Q86U06 439 aaKnown RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 ZNF329Q86UD4 541 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 YAF2Q8IY57 180 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 ANKRD13AQ8IZ07 590 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 FSTL5Q8N475 847 aaPredicted RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 KAT2BQ92831 832 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 NMD3Q96D46 503 aaKnown RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 HOOK2Q96ED9 719 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 AIFM3Q96NN9 605 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 SENP7Q9BQF6 1050 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 PIMREGQ9BSJ6 248 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 STK32BQ9NY57 414 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 DKK4Q9UBT3 224 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 AFF4Q9UHB7 1163 aaKnown RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 VPS51Q9UID3 782 aa4.62□□□□□ -1.67
VPS50-219ENST00000495039 ERRFI1Q9UJM3 462 aaPredicted RBP4.62□□□□□ -1.67
VPS50-219ENST00000495039 CAMTA2O94983 1202 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 BRAFP15056 766 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 SLC4A8Q2Y0W8 1093 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 NPNTQ6UXI9 565 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 TMPRSS12Q86WS5 348 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 WFIKKN2Q8TEU8 576 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 PRR11Q96HE9 360 aaPredicted RBP4.61□□□□□ -1.67
VPS50-219ENST00000495039 SLITRK1Q96PX8 696 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 HTATIP2Q9BUP3 242 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 TTLL2Q9BWV7 592 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 GATA5Q9BWX5 397 aaPredicted RBP4.61□□□□□ -1.67
VPS50-219ENST00000495039 SAP30LQ9HAJ7 183 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 ABHD10Q9NUJ1 306 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 HIF1ANQ9NWT6 349 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 PLK2Q9NYY3 685 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 CPNE7Q9UBL6 633 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 RGS17Q9UGC6 210 aaPredicted RBP4.61□□□□□ -1.67
VPS50-219ENST00000495039 MID2Q9UJV3 735 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 ICAM5Q9UMF0 924 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 USP19O94966 1318 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 COL15A1P39059 1388 aa4.61□□□□□ -1.67
VPS50-219ENST00000495039 TTC34A8MYJ7 566 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 ISM1B1AKI9 464 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 LINC01565O15544 149 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 WDR47O94967 919 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 PAPSS2O95340 614 aaPredicted RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 SLC3A2P08195 630 aaKnown RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 ACAA1P09110 424 aaPredicted RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 TXNP10599 105 aaKnown RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 PIK3CD-AS1Q5SR53 167 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 ATG9BQ674R7 924 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 MORC1Q86VD1 984 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 SLC35G2Q8TBE7 412 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 CELF1Q92879 486 aaKnown RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 TAAR9Q96RI9 348 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 B3GNT5Q9BYG0 378 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 PLSCR4Q9NRQ2 329 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 ASNSD1Q9NWL6 643 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 DDX56Q9NY93 547 aaKnown RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 IPO11Q9UI26 975 aaKnown RBP4.6□□□□□ -1.67
VPS50-219ENST00000495039 MYO6Q9UM54 1294 aa4.6□□□□□ -1.67
VPS50-219ENST00000495039 RPS10-NUDT3A0A1W2PQS6 291 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 CAPN8A6NHC0 703 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 PPM1GO15355 546 aaPredicted RBP4.59□□□□□ -1.67
VPS50-219ENST00000495039 GRID2O43424 1007 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 DUSP1P28562 367 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 HTR7P34969 479 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 SOX2P48431 317 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 DGKQP52824 942 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 HILS1P60008 231 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 TTLL5Q6EMB2 1281 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 SWSAP1Q6NVH7 229 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 SRGAP1Q7Z6B7 1085 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 ZBTB34Q8NCN2 500 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 WDR83Q9BRX9 315 aaKnown RBP4.59□□□□□ -1.67
VPS50-219ENST00000495039 C22orf23Q9BZE7 217 aa4.59□□□□□ -1.67
VPS50-219ENST00000495039 TYW1Q9NV66 732 aaKnown RBP4.59□□□□□ -1.67
VPS50-219ENST00000495039 A0A087WYN8 130 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 PODXLO00592 558 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 PRYO14603 147 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 TUSC2O75896 110 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 PDGFRBP09619 1106 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 CHRNB1P11230 501 aa4.58□□□□□ -1.68
VPS50-219ENST00000495039 ZKSCAN1P17029 563 aaPredicted RBP4.58□□□□□ -1.68
VPS50-219ENST00000495039 HOXD12P35452 270 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms