RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LRRC14Q15048 493 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 KCNT2Q6UVM3 1135 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PRSS55Q6UWB4 352 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 BHLHA9Q7RTU4 235 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 NT5C3BQ969T7 300 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 SNF8Q96H20 258 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PGLYRP2Q96PD5 576 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 YME1L1Q96TA2 773 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 CALN1Q9BXU9 219 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 PABPC3Q9H361 631 aaKnown RBP12.63□□□□□ -0.39
HDAC6-230ENST00000488543 SLC40A1Q9NP59 571 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 AAASQ9NRG9 546 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 CTNNAL1Q9UBT7 734 aa12.63□□□□□ -0.39
HDAC6-230ENST00000488543 C2CD2LO14523 706 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ACSL3O95573 720 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ATF2P15336 505 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 CYP2F1P24903 491 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 PDK2Q15119 407 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 LONRF1Q17RB8 773 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 SLC25A52Q3SY17 297 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FAM43BQ6ZT52 329 aaPredicted RBP12.62□□□□□ -0.39
HDAC6-230ENST00000488543 STRADAQ7RTN6 431 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 CACNA2D3Q8IZS8 1091 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 SIX6OS1Q8N1H7 587 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 STKLD1Q8NE28 680 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FAF2Q96CS3 445 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 RNF157Q96PX1 679 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 NPY6RQ99463 290 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 PRMT1Q99873 361 aaKnown RBP12.62□□□□□ -0.39
HDAC6-230ENST00000488543 TMEM175Q9BSA9 504 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FRMD8P1Q9BZ68 369 aaPredicted RBP12.62□□□□□ -0.39
HDAC6-230ENST00000488543 MAGEB5Q9BZ81 275 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 LTBP2Q14767 1821 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FBXO21O94952 628 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ZSCAN5DPP0CG00 497 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ETS1P14921 441 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 RPL17P18621 184 aaKnown RBP12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ITIH2P19823 946 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FGFR3P22607 806 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 SULT1E1P49888 294 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ITGA8P53708 1063 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 YWHAZP63104 245 aaKnown RBP12.62□□□□□ -0.39
HDAC6-230ENST00000488543 LMNB2Q03252 620 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 PPIGQ13427 754 aaKnown RBP eCLIP12.62□□□□□ -0.393e-6■■■□□ 16.6
HDAC6-230ENST00000488543 CTXN3Q4LDR2 81 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ANKRD20A8PQ5CZ79 823 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 SYPL2Q5VXT5 272 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 LRRC34Q8IZ02 419 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 CCDC185Q8N715 623 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 PQLC3Q8N755 202 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 TTC13Q8NBP0 860 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 DPF3Q92784 378 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 FAM149B1Q96BN6 582 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 IGSF21Q96ID5 467 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 MTMR10Q9NXD2 777 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF148Q9UQR1 794 aa12.62□□□□□ -0.39
HDAC6-230ENST00000488543 SF3B1O75533 1304 aaKnown RBP eCLIP12.62□□□□□ -0.391e-19■■■■■ 160.8
HDAC6-230ENST00000488543 ARHGEF37A1IGU5 675 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 YJEFN3A6XGL0 299 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 E7ENQ6 273 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 APOC4-APOC2K7ER74 178 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 HGSO14964 777 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 RGS16O15492 202 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 APOC2P02655 101 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 NOS2P35228 1153 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 CHKAP35790 457 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 TSPY1Q01534 308 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 CALCOCO2Q13137 446 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 MRPL58Q14197 206 aaKnown RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 KRT81Q14533 505 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 DPYSL2Q16555 572 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 SPDYCQ5MJ68 293 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ERMARDQ5T6L9 678 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 NPNTQ6UXI9 565 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 VSIG1Q86XK7 387 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 TTC9BQ8N6N2 239 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 CCDC89Q8N998 374 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ATAD1Q8NBU5 361 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 PCDH19Q8TAB3 1148 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ATXN2LQ8WWM7 1075 aaKnown RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 C10orf88Q9H8K7 445 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 CNGB3Q9NQW8 809 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 MTRF1LQ9UGC7 380 aaKnown RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ATXN2Q99700 1313 aaKnown RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ZNF487B1APH4 448 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 SYN3O14994 580 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ADAM12O43184 909 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 BAIAP3O94812 1187 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 GJB5O95377 273 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 DESP17661 470 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 L1CAMP32004 1257 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ADCY8P40145 1251 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 SDHAF4Q5VUM1 108 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 GSTA5Q7RTV2 222 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 SUGP1Q8IWZ8 645 aaKnown RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 KCTD15Q96SI1 283 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 TMEM121Q9BTD3 319 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 TTPALQ9BTX7 342 aa12.61□□□□□ -0.39
HDAC6-230ENST00000488543 ABI2Q9NYB9 513 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-230ENST00000488543 EFCAB14O75071 495 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms