RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 IPO4Q8TEX9 1081 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ALG3Q92685 438 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 FGF13Q92913 245 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 NXPE3Q969Y0 559 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 C18orf8Q96DM3 657 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SGSM3Q96HU1 749 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 VCPIP1Q96JH7 1222 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SUSD3Q96L08 255 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 RPF1Q9H9Y2 349 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CYP4F11Q9HBI6 524 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 FAM86C1Q9NVL1 165 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 HCFC1R1Q9NWW0 138 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 GRHL1Q9NZI5 618 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CNOT8Q9UFF9 292 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ASIC3Q9UHC3 531 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CDH7Q9ULB5 785 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 UBQLN1Q9UMX0 589 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ACTL7BQ9Y614 415 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ZFP37Q9Y6Q3 630 aaPredicted RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 NUMBLQ9Y6R0 609 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CFAP54Q96N23 3096 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 TLDC2A0PJX2 215 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 WDR27A2RRH5 827 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 LACTBL1A8MY62 500 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 H0Y858 1186 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 O00370 1275 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 XPOTO43592 962 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 TCEA3O75764 348 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SUN1O94901 812 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 PIGRP01833 764 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SRFP11831 508 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CPB1P15086 417 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 FLT3P36888 993 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 NSFP46459 744 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 RPL21P46778 160 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CLCN5P51795 746 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 XRCC4Q13426 336 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 HTR4Q13639 388 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SLC29A2Q14542 456 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CLEC16AQ2KHT3 1053 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 FBXW10Q5XX13 1052 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ARHGEF18Q6ZSZ5 1173 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 RTL10Q7L3V2 364 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 NOP9Q86U38 636 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 TMEM130Q8N3G9 435 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ITFG1Q8TB96 612 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 GPR152Q8TDT2 470 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ING5Q8WYH8 240 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 ATOH1Q92858 354 aaPredicted RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 KCNN1Q92952 543 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 TTC25Q96NG3 672 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 PHOX2BQ99453 314 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CBWD1Q9BRT8 395 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 PCIF1Q9H4Z3 704 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 SLC40A1Q9NP59 571 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 RAB20Q9NX57 234 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 NKIRAS1Q9NYS0 192 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 DNMT3BQ9UBC3 853 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 CA14Q9ULX7 337 aa9.41□□□□□ -0.9
COL12A1-208ENST00000486533 MRPS23Q9Y3D9 190 aaKnown RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.41□□□□□ -0.9
COL12A1-208ENST00000486533 A0A0B4J269 797 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 TISP43B9A030 160 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 ANHXE9PGG2 379 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 FAM189A1O60320 539 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 RASSF9O75901 435 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 LDHAP00338 332 aaKnown RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 RHOP08100 348 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 VIMP08670 466 aaKnown RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 POU2F2P09086 479 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 KRT5P13647 590 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 CYP3A5P20815 502 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 TBXAS1P24557 533 aaPredicted RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 LRPAP1P30533 357 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 SCTRP47872 440 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 AP3M2P53677 418 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 FMO1Q01740 532 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 YWHAHQ04917 246 aaPredicted RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 STAT4Q14765 748 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 CWF19L1Q69YN2 538 aaKnown RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 JADE1Q6IE81 842 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 SLFN12LQ6IEE8 588 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 SLC39A4Q6P5W5 647 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 PARM1Q6UWI2 310 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 DSTYKQ6XUX3 929 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 MTSS1LQ765P7 747 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 RHOT1Q8IXI2 618 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 PARP9Q8IXQ6 854 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 ATL2Q8NHH9 583 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 GIMAP7Q8NHV1 300 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 PARD3BQ8TEW8 1205 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 POMGNT1Q8WZA1 660 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 FGF14Q92915 247 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 RBM41Q96IZ5 413 aaKnown RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 MYCBPQ99417 103 aaPredicted RBP9.4□□□□□ -0.9
COL12A1-208ENST00000486533 IRF2BPLQ9H1B7 796 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 TAS2R14Q9NYV8 317 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 SENP1Q9P0U3 644 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 WNT16Q9UBV4 365 aa9.4□□□□□ -0.9
COL12A1-208ENST00000486533 TIMM13Q9Y5L4 95 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms