RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 PDCL3Q9H2J4 239 aa18.42■□□□□ 0.54
COL6A1-204ENST00000486023 SIX2Q9NPC8 291 aa18.42■□□□□ 0.54
COL6A1-204ENST00000486023 EBF1Q9UH73 591 aa18.42■□□□□ 0.54
COL6A1-204ENST00000486023 CYTH4Q9UIA0 394 aa18.42■□□□□ 0.54
COL6A1-204ENST00000486023 NAALADL1Q9UQQ1 740 aa18.42■□□□□ 0.54
COL6A1-204ENST00000486023 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.42■□□□□ 0.54
COL6A1-204ENST00000486023 FANCMQ8IYD8 2048 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 GOLGA6L7A0A1B0GV03 622 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 GTPBP10A4D1E9 387 aaKnown RBP18.41■□□□□ 0.54
COL6A1-204ENST00000486023 E5RJQ4 531 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 FOXN3O00409 490 aaPredicted RBP18.41■□□□□ 0.54
COL6A1-204ENST00000486023 CISD3P0C7P0 127 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 HOXB2P14652 356 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 NTSR1P30989 418 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 KRT9P35527 623 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 ACADSBP45954 432 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 TBX4P57082 545 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 PTK2Q05397 1052 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 RSPO4Q2I0M5 234 aaPredicted RBP18.41■□□□□ 0.54
COL6A1-204ENST00000486023 TCP11X2Q5H9J9 407 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 MIIPQ5JXC2 388 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 SCML4Q8N228 414 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 LSM14BQ9BX40 385 aaKnown RBP18.41■□□□□ 0.54
COL6A1-204ENST00000486023 PLCB1Q9NQ66 1216 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 SEMA4GQ9NTN9 838 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 CACNA2D2Q9NY47 1150 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 HCN2Q9UL51 889 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 CLEC4EQ9ULY5 219 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 RAD54BQ9Y620 910 aa18.41■□□□□ 0.54
COL6A1-204ENST00000486023 SPTBN4Q9H254 2564 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 WASH3PC4AMC7 463 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 ZBTB24O43167 697 aaPredicted RBP18.4■□□□□ 0.54
COL6A1-204ENST00000486023 MAP3K13O43283 966 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 ELF2Q15723 593 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 GEN1Q17RS7 908 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 PLK5Q496M5 336 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 HSF5Q4G112 596 aaPredicted RBP18.4■□□□□ 0.54
COL6A1-204ENST00000486023 MPPE1Q53F39 396 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 CPXM2Q8N436 756 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 SHC3Q92529 594 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 TMA16Q96EY4 203 aaKnown RBP18.4■□□□□ 0.54
COL6A1-204ENST00000486023 CIPCQ9C0C6 399 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 TJP2Q9UDY2 1190 aa18.4■□□□□ 0.54
COL6A1-204ENST00000486023 SYNJ2BP-COX16A0A087WUM0 186 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 PAPSS1O43252 624 aaPredicted RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SART1O43290 800 aaKnown RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 RHOBTB1O94844 696 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 MOCS2O96007 188 aaPredicted RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 PENKP01210 267 aaPredicted RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 TGM1P22735 817 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SLC11A2P49281 568 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 CREB5Q02930 508 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 ARID5AQ03989 594 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 KCNMA1Q12791 1236 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 PDCLQ13371 301 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 TAF5Q15542 800 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 ADGRF1Q5T601 910 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SYPL2Q5VXT5 272 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 RFWD3Q6PCD5 774 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SLC47A2Q86VL8 602 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 RASSF3Q86WH2 238 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 UNC45BQ8IWX7 931 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 FRMD1Q8N878 549 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 ENOX1Q8TC92 643 aaKnown RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 KCNV2Q8TDN2 545 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 DQX1Q8TE96 717 aaKnown RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 PPP1R13BQ96KQ4 1090 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SLC4A5Q9BY07 1137 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 DUSP15Q9H1R2 295 aaPredicted RBP18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SMOC1Q9H4F8 434 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 SYNCQ9H7C4 482 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 FANCLQ9NW38 375 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 COX16Q9P0S2 106 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 STIM2Q9P246 746 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 STARD13Q9Y3M8 1113 aa18.39■□□□□ 0.53
COL6A1-204ENST00000486023 GRAP2O75791 330 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 FYNP06241 537 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 TPM2P07951 284 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 CHRM1P11229 460 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 BCKDHBP21953 392 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 EEF1GP26641 437 aaKnown RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 CLCN1P35523 988 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 LMNB2Q03252 620 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 DRAP1Q14919 205 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 SF3A2Q15428 464 aaKnown RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 CT47A1Q5JQC4 288 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 KLHDC7AQ5VTJ3 777 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 TAF3Q5VWG9 929 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 OR6B2Q6IFH4 312 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 MSANTD2Q6P1R3 559 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 C11orf57Q6ZUT1 292 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 ARMCX6Q7L4S7 300 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 WDTC1Q8N5D0 677 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 DEFB119Q8N690 84 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 C1orf131Q8NDD1 294 aaKnown RBP18.38■□□□□ 0.53
COL6A1-204ENST00000486023 STK32AQ8WU08 396 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 SORCS1Q8WY21 1168 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 FHOD1Q9Y613 1164 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 SDK1Q7Z5N4 2213 aa18.38■□□□□ 0.53
COL6A1-204ENST00000486023 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms