RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	CRELD1	Q96HD1	420 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	HEXIM2	Q96MH2	286 aa	Known RBP	11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	KLF16	Q9BXK1	252 aa	Predicted RBP	11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	NIF3L1	Q9GZT8	377 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	CYP3A43	Q9HB55	503 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	TMEM8A	Q9HCN3	771 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	DEC1	Q9P2X7	70 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	ATP6V1D	Q9Y5K8	247 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	GTF3C3	Q9Y5Q9	886 aa		11.14	□□□□□ -0.63
HMGN1-215	ENST00000485550	MYLK	Q15746	1914 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550		A0A0A0MRY4	1105 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	NEDD8-MDP1	E9PL57	170 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	GREM1	O60565	184 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	ADAM23	O75077	832 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	CILP	O75339	1184 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	HOXD12	P35452	270 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	TNFRSF4	P43489	277 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	TUB	P50607	506 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	ZNF33A	Q06730	810 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	INCA1	Q0VD86	236 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	BYSL	Q13895	437 aa	Known RBP	11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	HNRNPD	Q14103	355 aa	Known RBP	11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	ZCWPW2	Q504Y3	356 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	EOGT	Q5NDL2	527 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	C10orf120	Q5SQS8	335 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	C10orf76	Q5T2E6	689 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	KRT39	Q6A163	491 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	HTR3D	Q70Z44	454 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	ETFBKMT	Q8IXQ9	262 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	PHTF2	Q8N3S3	785 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	CCDC150	Q8NCX0	1101 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	ERCC4	Q92889	916 aa	Predicted RBP	11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	TATDN2	Q93075	761 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	DNAAF2	Q9NVR5	837 aa	Known RBP	11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	NAGPA	Q9UK23	515 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	SCML2	Q9UQR0	700 aa		11.13	□□□□□ -0.63
HMGN1-215	ENST00000485550	NUMA1	Q14980	2115 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	CETN3	O15182	167 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	HOXC11	O43248	304 aa	Predicted RBP	11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	GJB3	O75712	270 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	HMBS	P08397	361 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	KIF11	P52732	1056 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	TCERG1L	Q5VWI1	586 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	GRAMD4	Q6IC98	578 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	SCD5	Q86SK9	330 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	SLCO6A1	Q86UG4	719 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	MARCH9	Q86YJ5	346 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	MIB1	Q86YT6	1006 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	SLC41A1	Q8IVJ1	513 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	NAXD	Q8IW45	347 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	PLPP6	Q8IY26	295 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	ARID3A	Q99856	593 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	BBS2	Q9BXC9	721 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	DUSP16	Q9BY84	665 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	CYLD	Q9NQC7	956 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	CISH	Q9NSE2	258 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	DNAJC17	Q9NVM6	304 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	RAB20	Q9NX57	234 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	PLK2	Q9NYY3	685 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	LSM7	Q9UK45	103 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	HCN2	Q9UL51	889 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	PTPRQ	Q9UMZ3	2332 aa		11.12	□□□□□ -0.63
HMGN1-215	ENST00000485550	MAST4	O15021	2626 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	GOLGA6L4	A6NEF3	574 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	SYP	P08247	313 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	EPB41	P11171	864 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	TYR	P14679	529 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	GABRG2	P18507	467 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	GTF2H1	P32780	548 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	PRCP	P42785	496 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	PLA2G4A	P47712	749 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	MXI1	P50539	228 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	GOLGA8F	Q08AF8	430 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	GOLGA8DP	Q0D2H9	430 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	DSG2	Q14126	1118 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	EDRF1	Q3B7T1	1238 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	PLEKHG6	Q3KR16	790 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	HSF5	Q4G112	596 aa	Predicted RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	EGFLAM	Q63HQ2	1017 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	TOGARAM2	Q6ZUX3	1019 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	RABEPK	Q7Z6M1	372 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	RGL4	Q8IZJ4	473 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	TRIML1	Q8N9V2	468 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	TERB1	Q8NA31	727 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	SLC4A11	Q8NBS3	891 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	FBXL13	Q8NEE6	735 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	PTCD2	Q8WV60	388 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	TMEM176A	Q96HP8	235 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	HSPA12B	Q96MM6	686 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	XPO6	Q96QU8	1125 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	ACOX2	Q99424	681 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	CALCOCO1	Q9P1Z2	691 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	RASAL2	Q9UJF2	1139 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	DNMT3L	Q9UJW3	386 aa		11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	APOBEC2	Q9Y235	224 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-215	ENST00000485550	PCDHA5	Q9Y5H7	936 aa		11.11	□□□□□ -0.63

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