RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 GIPC1O14908 333 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 ZBTB24O43167 697 aaPredicted RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 CALCAP01258 141 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 VDRP11473 427 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 TBXAS1P24557 533 aaPredicted RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 MAPK8P45983 427 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 RGS7P49802 495 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 NOVA1P51513 510 aaKnown RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 DAB2IPQ5VWQ8 1189 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 TMEM270Q6UE05 265 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 KIAA1324Q6UXG2 1013 aaKnown RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 FMNL3Q8IVF7 1028 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 SIX6OS1Q8N1H7 587 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 TFAP2BQ92481 460 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 DHTKD1Q96HY7 919 aaPredicted RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 NT5C1BQ96P26 610 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 GTPBP4Q9BZE4 634 aaKnown RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 METTL14Q9HCE5 456 aaKnown RBP22.56■■□□□ 1.2
USP40-215ENST00000484528 FSCN3Q9NQT6 498 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 CTNND2Q9UQB3 1225 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 PCDHB4Q9Y5E5 795 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 STON1Q9Y6Q2 735 aa22.56■■□□□ 1.2
USP40-215ENST00000484528 YJEFN3A6XGL0 299 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 E7ENQ6 273 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 BIN1O00499 593 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 AP5Z1O43299 807 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 LCP1P13796 627 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 PPM1KQ8N3J5 372 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 DDI1Q8WTU0 396 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 NELFBQ8WX92 580 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 PLD4Q96BZ4 506 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 CEP63Q96MT8 703 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 NUSAP1Q9BXS6 441 aaKnown RBP22.55■■□□□ 1.2
USP40-215ENST00000484528 SFMBT1Q9UHJ3 866 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 EVLQ9UI08 416 aaPredicted RBP22.55■■□□□ 1.2
USP40-215ENST00000484528 PILRBQ9UKJ0 227 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 SLC27A6Q9Y2P4 619 aa22.55■■□□□ 1.2
USP40-215ENST00000484528 MSI1O43347 362 aaKnown RBP22.54■■□□□ 1.2
USP40-215ENST00000484528 TSPAN3O60637 253 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 CYBBP04839 570 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 CFIP05156 583 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 SETSIPP0DME0 302 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 BMP6P22004 513 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 PMLP29590 882 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 BSPRYQ5W0U4 402 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 TTI2Q6NXR4 508 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 SLC36A4Q6YBV0 504 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 CPXM2Q8N436 756 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 RNF139Q8WU17 664 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 MRGPRX1Q96LB2 322 aa22.54■■□□□ 1.2
USP40-215ENST00000484528 OLA1Q9NTK5 396 aaKnown RBP22.54■■□□□ 1.2
USP40-215ENST00000484528 PCDH15Q96QU1 1955 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 PPP1R3GB7ZBB8 358 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 GADD45BO75293 160 aaPredicted RBP22.53■■□□□ 1.2
USP40-215ENST00000484528 ENGP17813 658 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 BRD2P25440 801 aaKnown RBP22.53■■□□□ 1.2
USP40-215ENST00000484528 IL12RB1P42701 662 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 STX17P56962 302 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 ZNF33AQ06730 810 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 TRIP4Q15650 581 aaPredicted RBP22.53■■□□□ 1.2
USP40-215ENST00000484528 PKDCCQ504Y2 493 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 SPDYCQ5MJ68 293 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 SH3PXD2AQ5TCZ1 1133 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 ANKS1BQ7Z6G8 1248 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 SLC41A1Q8IVJ1 513 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 ZSWIM1Q9BR11 485 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 ANGPTL2Q9UKU9 493 aa22.53■■□□□ 1.2
USP40-215ENST00000484528 M0QYV0 167 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 RNF225M0QZC1 329 aaPredicted RBP22.52■■□□□ 1.2
USP40-215ENST00000484528 GFRA2O00451 464 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 ZNF217O75362 1048 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 GABBR2O75899 941 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 DAOAP59103 153 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 LMAN2Q12907 356 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 STARD3Q14849 445 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 FUT11Q495W5 492 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 LCLAT1Q6UWP7 414 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 RRAGAQ7L523 313 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 CACUL1Q86Y37 369 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 ARHGEF19Q8IW93 802 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 SORCS1Q8WY21 1168 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 KCTD13Q8WZ19 329 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 PIWIL1Q96J94 861 aaKnown RBP22.52■■□□□ 1.2
USP40-215ENST00000484528 HSPA12BQ96MM6 686 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 CIPCQ9C0C6 399 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 THAP10Q9P2Z0 257 aaPredicted RBP22.52■■□□□ 1.2
USP40-215ENST00000484528 KIAA1257Q9ULG3 409 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 PCNX2A6NKB5 2137 aa22.52■■□□□ 1.2
USP40-215ENST00000484528 NUMA1Q14980 2115 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 PAEPP09466 180 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 PPP1R2P41236 205 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 HARS2P49590 506 aaKnown RBP22.51■■□□□ 1.19
USP40-215ENST00000484528 ZNF252P-AS1Q0IIN9 211 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 MORC3Q14149 939 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 PMF1Q6P1K2 205 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 FAM217AQ8IXS0 508 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 TRIML1Q8N9V2 468 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 RBBP8NLQ8NC74 664 aaPredicted RBP22.51■■□□□ 1.19
USP40-215ENST00000484528 LMO3Q8TAP4 145 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 UCMAQ8WVF2 138 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms