RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SAMD11	Q96NU1	681 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	DCLK3	Q9C098	648 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	NKX2-4	Q9H2Z4	354 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	LRRC19	Q9H756	370 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	CCSER2	Q9H7U1	834 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	CWC15	Q9P013	229 aa	Known RBP	11.64	□□□□□ -0.55
APTX-223	ENST00000479656	PLXNA3	P51805	1871 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	ZNF840P	A6NDX5	716 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656		H3BNC9	293 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CREB3	O43889	395 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	ZMYND10	O75800	440 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	GLUD1	P00367	558 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CHRNA3	P32297	505 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CLCN4	P51793	760 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CCNG2	Q16589	344 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	EFHC2	Q5JST6	749 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	C10orf120	Q5SQS8	335 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	MSANTD2	Q6P1R3	559 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	BBS12	Q6ZW61	710 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PDZD8	Q8NEN9	1154 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PCDH19	Q8TAB3	1148 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CCDC26	Q8TAB7	109 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PSMG2	Q969U7	264 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SERPINB11	Q96P15	392 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PNKP	Q96T60	521 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SLITRK6	Q9H5Y7	841 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SNX10	Q9Y5X0	201 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	GBF1	Q92538	1859 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	ZNF638	Q14966	1978 aa	Known RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	FAM72C	H0Y354	149 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	DYNC1I1	O14576	645 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PER2	O15055	1255 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TTI1	O43156	1089 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TLR5	O60602	858 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	LRG1	P02750	347 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	C8A	P07357	584 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	GOT1	P17174	413 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CCR1	P32246	355 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	AIF1	P55008	147 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SCAP	Q12770	1279 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	FAM72A	Q5TYM5	149 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SNX30	Q5VWJ9	437 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	FAM72D	Q6L9T8	149 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CCDC149	Q6ZUS6	474 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	MAATS1	Q7Z4T9	603 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	FAM72B	Q86X60	149 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	MIB1	Q86YT6	1006 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CCDC105	Q8IYK2	499 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	PQLC3	Q8N755	202 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	C12orf50	Q8NA57	414 aa	Predicted RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	OVCA2	Q8WZ82	227 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TRMT2B	Q96GJ1	504 aa	Known RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	CSPG4P5	Q96PW8	444 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	ZNF670	Q9BS34	389 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	ZNF334	Q9HCZ1	680 aa	Predicted RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	OLA1	Q9NTK5	396 aa	Known RBP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
APTX-223	ENST00000479656	ARHGEF38	Q9NXL2	777 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TRPM5	Q9NZQ8	1165 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	MARCH2	Q9P0N8	246 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	MSRA	Q9UJ68	235 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	RASAL2	Q9UJF2	1139 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	TLR6	Q9Y2C9	796 aa		11.63	□□□□□ -0.55
APTX-223	ENST00000479656	SLC12A8	A0AV02	714 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	AMPD1	P23109	780 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	ARL4A	P40617	200 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	PTGIR	P43119	386 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	TBX4	P57082	545 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	DR1	Q01658	176 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	TFDP2	Q14188	446 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	BRMS1L	Q5PSV4	323 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	C1orf228	Q6PIY5	440 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	NPNT	Q6UXI9	565 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	ITIH5	Q86UX2	942 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	VSIG1	Q86XK7	387 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	SLC22A17	Q8WUG5	538 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	ARNTL2	Q8WYA1	636 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	FAF2	Q96CS3	445 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	SLC39A13	Q96H72	371 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	SIK2	Q9H0K1	926 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	HOMER3	Q9NSC5	361 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	PCYOX1	Q9UHG3	505 aa		11.62	□□□□□ -0.55
APTX-223	ENST00000479656	TARSL2	A2RTX5	802 aa	Known RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	ZNF487	B1APH4	448 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	LIAS	O43766	372 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	CLASP2	O75122	1294 aa	Known RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	PAGE1	O75459	146 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	HEXIM1	O94992	359 aa	Known RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	MOCS2	O96007	188 aa	Predicted RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	F11	P03951	625 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	HMBS	P08397	361 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	PECAM1	P16284	738 aa	Predicted RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	ATP5C1	P36542	298 aa	Known RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	GGCX	P38435	758 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	OTUD4	Q01804	1114 aa	Known RBP	11.61	□□□□□ -0.55
APTX-223	ENST00000479656	GUCY2D	Q02846	1103 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	PPP2R5D	Q14738	602 aa		11.61	□□□□□ -0.55
APTX-223	ENST00000479656	HECTD3	Q5T447	861 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms