RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 USH1CQ9Y6N9 552 aa12.65□□□□□ -0.38
PTPRF-212ENST00000477970 ATP5HO75947 161 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 LCP1P13796 627 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PTPN1P18031 435 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 CCNFP41002 786 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 GLUD2P49448 558 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 MRPS6P82932 125 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 SLC10A2Q12908 348 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PTK7Q13308 1070 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PRKD1Q15139 912 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 FSCN1Q16658 493 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 TTC39BQ5VTQ0 682 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 STEAP4Q687X5 459 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PIGZQ86VD9 579 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 SLAIN1Q8ND83 568 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 NTAN1Q96AB6 310 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PGAP3Q96FM1 320 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 DHX35Q9H5Z1 703 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 STAP1Q9ULZ2 295 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 HEY1Q9Y5J3 304 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PATJQ8NI35 1801 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 UBOX5O94941 541 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PDGFRBP09619 1106 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF135P52742 658 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 NCALDP61601 193 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 SCAPQ12770 1279 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PAFAH1B3Q15102 231 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF449Q6P9G9 518 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 LVRNQ6Q4G3 990 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 CAPN12Q6ZSI9 719 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PAQR9Q6ZVX9 377 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 CCDC185Q8N715 623 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 LPIN3Q9BQK8 851 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 APOL6Q9BWW8 343 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 UPF3AQ9H1J1 476 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PLAC1Q9HBJ0 212 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 RRN3Q9NYV6 651 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 DTLQ9NZJ0 730 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 TRPV2Q9Y5S1 764 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 KLF11O14901 512 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 HCRTO43612 131 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 DUSP11O75319 330 aaKnown RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 AKR1A1P14550 325 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ARL4AP40617 200 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ETV4P43268 484 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 LHX1P48742 406 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 RGS19P49795 217 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 MGAT5Q09328 741 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 KBTBD12Q3ZCT8 623 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 RAB41Q5JT25 222 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF618Q5T7W0 954 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ASRGL1Q7L266 308 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 SCML4Q8N228 414 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF75CPQ92670 426 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-212ENST00000477970 KLK14Q9P0G3 267 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 PTCH2Q9Y6C5 1203 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 IKBKGQ9Y6K9 419 aa12.64□□□□□ -0.39
PTPRF-212ENST00000477970 FAM159BA6NKW6 160 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 H3BRJ5 948 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 DCTN3O75935 186 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 APOEP02649 317 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 MT-ND3P03897 115 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 INHBAP08476 426 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 HCAR3P49019 387 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 NRLP54845 237 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 GBE1Q04446 702 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 LGSNQ5TDP6 509 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 ECHDC2Q86YB7 292 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 CCNJLQ8IV13 435 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 DEFB106AQ8N104 65 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 FITM2Q8N6M3 262 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 CCDC63Q8NA47 563 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 TFB1MQ8WVM0 346 aaKnown RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 ZNF333Q96JL9 665 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 SIGLEC10Q96LC7 697 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 EBNA1BP2Q99848 306 aaKnown RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 A0A0A0MRY4 1105 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 CYB561D2O14569 222 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 TGDSO95455 350 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 CNTFP26441 200 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 SULT1E1P49888 294 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 SARNPP82979 210 aaKnown RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 NAB1Q13506 487 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 PPP6R3Q5H9R7 873 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 KCNT2Q6UVM3 1135 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 CLEC20AQ6ZU45 233 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 MRPL10Q7Z7H8 261 aaKnown RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 PARP9Q8IXQ6 854 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 GSDMBQ8TAX9 411 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 C10orf82Q8WW14 230 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 HTR3CQ8WXA8 447 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 SPATA13Q96N96 652 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 MTG1Q9BT17 334 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 ZC3H7BQ9UGR2 993 aaKnown RBP12.63□□□□□ -0.39
PTPRF-212ENST00000477970 PCDHA11Q9Y5I1 949 aa12.63□□□□□ -0.39
PTPRF-212ENST00000477970 TNPO2O14787 897 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 OPHN1O60890 802 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 ALDH1A2O94788 518 aa12.62□□□□□ -0.39
PTPRF-212ENST00000477970 RPL9P32969 192 aaKnown RBP12.62□□□□□ -0.39
PTPRF-212ENST00000477970 YWHAGP61981 247 aaKnown RBP eCLIP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms