RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 PCDHGC3Q9UN70 934 aa22.71■■□□□ 1.23
COL9A3-211ENST00000477612 KCNJ18B7U540 433 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 GOLGA6L22H0YM25 854 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 THAP12O43422 761 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 ALDH1A2O94788 518 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 ZNF445P59923 1031 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 RING1Q06587 406 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 KCNJ12Q14500 433 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 TCP11X2Q5H9J9 407 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 KBTBD6Q86V97 674 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 MDGA1Q8NFP4 955 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 OLIG1Q8TAK6 271 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 AZIN2Q96A70 460 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 SLC2A11Q9BYW1 496 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 IRX2Q9BZI1 471 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-211ENST00000477612 POLMQ9NP87 494 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-211ENST00000477612 CYTH4Q9UIA0 394 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 DNAJC12Q9UKB3 198 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 AJAP1Q9UKB5 411 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-211ENST00000477612 CEP192Q8TEP8 1941 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 CEP250Q9BV73 2442 aa22.7■■□□□ 1.22
COL9A3-211ENST00000477612 NTSR1P30989 418 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 PLK5Q496M5 336 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 WDTC1Q8N5D0 677 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 GOLGA1Q92805 767 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 MIS12Q9H081 205 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 ZDHHC4Q9NPG8 344 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 ST7Q9NRC1 585 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 NFE2L3Q9Y4A8 694 aa22.69■■□□□ 1.22
COL9A3-211ENST00000477612 FOXN3O00409 490 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-211ENST00000477612 PAPSS1O43252 624 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-211ENST00000477612 EPN2O95208 641 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 CYBBP04839 570 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 CLCN1P35523 988 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 ID4P47928 161 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 PTK2Q05397 1052 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 SPEM2Q0P670 501 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 NNTQ13423 1086 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 MPPE1Q53F39 396 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 USP39Q53GS9 565 aaKnown RBP22.68■■□□□ 1.22
COL9A3-211ENST00000477612 HSP90AA4PQ58FG1 418 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 ADGRF1Q5T601 910 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 ANO7Q6IWH7 933 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 C11orf74Q86VG3 221 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 UNC45BQ8IWX7 931 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 PIWIL1Q96J94 861 aaKnown RBP22.68■■□□□ 1.22
COL9A3-211ENST00000477612 GABRG3Q99928 467 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 DUSP15Q9H1R2 295 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-211ENST00000477612 LHX5Q9H2C1 402 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 CD248Q9HCU0 757 aa22.68■■□□□ 1.22
COL9A3-211ENST00000477612 MSI1O43347 362 aaKnown RBP22.67■■□□□ 1.22
COL9A3-211ENST00000477612 USP8P40818 1118 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 CSRP2Q16527 193 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 CDKAL1Q5VV42 579 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 EGFLAMQ63HQ2 1017 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 NUGGCQ68CJ6 796 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 FAM71AQ8IYT1 594 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 BHMTQ93088 406 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 TRIM62Q9BVG3 475 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 SEMA4GQ9NTN9 838 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 PCDHGA5Q9Y5G8 931 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 DNAH14Q0VDD8 3507 aa22.67■■□□□ 1.22
COL9A3-211ENST00000477612 CKAP5Q14008 2032 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 A0A1W2PQF6 199 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 PRR5-ARHGAP8B1AHC4 643 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 E5RJQ4 531 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 NCAM1P13591 858 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 ARHGAP8P85298 464 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 LMNB2Q03252 620 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 PDCLQ13371 301 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 ENPP2Q13822 863 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 KLHDC7AQ5VTJ3 777 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 RNF43Q68DV7 783 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 DQX1Q8TE96 717 aaKnown RBP22.66■■□□□ 1.22
COL9A3-211ENST00000477612 DDI1Q8WTU0 396 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 RMDN1Q96DB5 314 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 SLC39A13Q96H72 371 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 SERPINB11Q96P15 392 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 ACOX2Q99424 681 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 NAA15Q9BXJ9 866 aaKnown RBP22.66■■□□□ 1.22
COL9A3-211ENST00000477612 TPSD1Q9BZJ3 242 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 DLL3Q9NYJ7 618 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 CLEC4EQ9ULY5 219 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 NAALADL1Q9UQQ1 740 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 TLR6Q9Y2C9 796 aa22.66■■□□□ 1.22
COL9A3-211ENST00000477612 TNRC6BQ9UPQ9 1833 aaKnown RBP22.66■■□□□ 1.22
COL9A3-211ENST00000477612 NPC1O15118 1278 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 FOXD2O60548 495 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-211ENST00000477612 MBD3O95983 291 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 HOXD9P28356 352 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-211ENST00000477612 TBX4P57082 545 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 BPIFB4P59827 614 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 EIF4EBP2Q13542 120 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-211ENST00000477612 GEN1Q17RS7 908 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 MPP7Q5T2T1 576 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 FCRL2Q96LA5 508 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-211ENST00000477612 POPDC2Q9HBU9 364 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 USP18Q9UMW8 372 aa22.65■■□□□ 1.22
COL9A3-211ENST00000477612 DCLK1O15075 740 aa22.64■■□□□ 1.21
COL9A3-211ENST00000477612 ACSL4O60488 711 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms