RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DLATP10515 647 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ATF6P18850 670 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 TNNI1P19237 187 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GABRR2P28476 465 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 PCSK1P29120 753 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GDI1P31150 447 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 NBL1P41271 181 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 VIPR2P41587 438 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 MAGEA9P43362 315 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 CYP2J2P51589 502 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 CDR1P51861 262 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 CYP24A1Q07973 514 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 PSMD2Q13200 908 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 UBXN2BQ14CS0 331 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 PSMD6Q15008 389 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 SOWAHAQ2M3V2 549 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GPR158Q5T848 1215 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 VITQ6UXI7 678 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF852Q6ZMS4 543 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GAREM2Q75VX8 874 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 DPH6Q7L8W6 267 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 C1orf210Q8IVY1 113 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 MFSD6LQ8IWD5 586 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 YAF2Q8IY57 180 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GOLGA5Q8TBA6 731 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GIPC2Q8TF65 315 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 UBE2Q2Q8WVN8 375 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 HPDLQ96IR7 371 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 NELL2Q99435 816 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 CGRRF1Q99675 332 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 BCO2Q9BYV7 579 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 SCAND2PQ9GZW5 306 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 LTB4R2Q9NPC1 389 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 TRPV5Q9NQA5 729 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 HEBP1Q9NRV9 189 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 TMLHEQ9NVH6 421 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 EGFL7Q9UHF1 273 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 GPN3Q9UHW5 284 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ZMYM5Q9UJ78 669 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 HPSEQ9Y251 543 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ZDHHC9Q9Y397 364 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 ST14Q9Y5Y6 855 aa7.27□□□□□ -1.25
CCDC88A-213ENST00000476903 MAN2B1O00754 1011 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 GABRDO14764 452 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 KLRC4O43908 158 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 EXOC3O60645 756 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CSH1P0DML2 217 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CSH2P0DML3 217 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 GLULP15104 373 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CD72P21854 359 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 NME2P22392 152 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 ACAT1P24752 427 aaKnown RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 DDX6P26196 483 aaKnown RBP eCLIP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 SYKP43405 635 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 LINC00310P59036 64 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 RPL10AP62906 217 aaKnown RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 BECN1Q14457 450 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 MAPRE1Q15691 268 aaKnown RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CFAP221Q4G0U5 840 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 STXBP5Q5T5C0 1151 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 ZBTB37Q5TC79 503 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 SCARA3Q6AZY7 606 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 C1orf228Q6PIY5 440 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 C4orf50Q6ZRC1 276 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 TRAPPC11Q7Z392 1133 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 FRMD5Q7Z6J6 570 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 SPATA2LQ8IUW3 424 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 ARID3BQ8IVW6 561 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 KIAA0895Q8NCT3 520 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CCDC47Q96A33 483 aaKnown RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CCDC127Q96BQ5 260 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 MSANTD3Q96H12 275 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 FUBP3Q96I24 572 aaKnown RBP eCLIP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 MMS19Q96T76 1030 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 PKMYT1Q99640 499 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 PI4K2AQ9BTU6 479 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 EPB41L4BQ9H329 900 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 TASP1Q9H6P5 420 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 OBP2AQ9NY56 170 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 UXTQ9UBK9 157 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 GTF3C4Q9UKN8 822 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CDH9Q9ULB4 789 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 MTF2Q9Y483 593 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 CFAP54Q96N23 3096 aa7.26□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM237AA0A1B0GTK4 181 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 A0A1W2PQ27 194 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 A0A1W2PQ64 194 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 A0A1W2PQD8 194 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 ARNTLO00327 626 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CHADO15335 359 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 LRRN2O75325 713 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SLITRK5O94991 958 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 KIF20AO95235 890 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 RPN1P04843 607 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM163BP0C2L3 166 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 HMGA1P17096 107 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 WARSP23381 471 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CYP2F1P24903 491 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 ATICP31939 592 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 AVPR1AP37288 418 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms