RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 HTRA1Q92743 480 aa6.74□□□□□ -1.33
VPS50-212ENST00000476413 KTI12Q96EK9 354 aaPredicted RBP6.74□□□□□ -1.33
VPS50-212ENST00000476413 TRMT61AQ96FX7 289 aaKnown RBP6.74□□□□□ -1.33
VPS50-212ENST00000476413 REXO5Q96IC2 774 aaKnown RBP6.74□□□□□ -1.33
VPS50-212ENST00000476413 UBN1Q9NPG3 1134 aa6.74□□□□□ -1.33
VPS50-212ENST00000476413 PI4KBQ9UBF8 816 aa6.74□□□□□ -1.33
VPS50-212ENST00000476413 EPN1Q9Y6I3 576 aaPredicted RBP6.74□□□□□ -1.33
VPS50-212ENST00000476413 GRID2IPA4D2P6 1211 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 LINC00473A8K010 186 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 STX16-NPEPL1H3BU86 382 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 STX16O14662 325 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 EPB41L2O43491 1005 aaKnown RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 PRAMEF2O60811 474 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 URI1O94763 535 aaPredicted RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 RHOBTB3O94955 611 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 TNFAIP3P21580 790 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 FPR3P25089 353 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 CYP2C18P33260 490 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 ADRA1BP35368 520 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 FOXL2P58012 376 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 RBM6P78332 1123 aaKnown RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 LMAN2Q12907 356 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 FOXI1Q12951 378 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 LSM12Q3MHD2 195 aaKnown RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 WDR53Q7Z5U6 358 aaPredicted RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 KAZALD1Q96I82 304 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 COQ10AQ96MF6 247 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 EIF3CQ99613 913 aaKnown RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 KRTAP4-7Q9BYR0 210 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 MMRN2Q9H8L6 949 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 PLEKHA2Q9HB19 425 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 MGAT4CQ9UBM8 478 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 SLC13A4Q9UKG4 626 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 AMFRQ9UKV5 643 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 RAB21Q9UL25 225 aa6.73□□□□□ -1.33
VPS50-212ENST00000476413 TRPC5Q9UL62 973 aaPredicted RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 REXO2Q9Y3B8 237 aaKnown RBP6.73□□□□□ -1.33
VPS50-212ENST00000476413 CES2O00748 559 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 SUV39H1O43463 412 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 TMPRSS11DO60235 418 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 DLDP09622 509 aaKnown RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 TMIGD3P0DMS9 266 aaPredicted RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 HKR1P10072 659 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 ENGP17813 658 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 MMP8P22894 467 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 DDIT3P35638 169 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 RBM5P52756 815 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS50-212ENST00000476413 GPC5P78333 572 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 DDX10Q13206 875 aaKnown RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 PTPAQ15257 358 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 DLGAP5Q15398 846 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 TBRG1Q3YBR2 411 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 LRRC24Q50LG9 513 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 RNASE12Q5GAN4 147 aaKnown RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 ZNF484Q5JVG2 852 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 ANKRD40Q6AI12 368 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 RINLQ6ZS11 566 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 VRK3Q8IV63 474 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 LINC01465Q8N7H1 131 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 EDC3Q96F86 508 aaKnown RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 FAR2Q96K12 515 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 SEC62Q99442 399 aaKnown RBP6.72□□□□□ -1.33
VPS50-212ENST00000476413 REEP2Q9BRK0 252 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 HERC2P3Q9BVR0 1158 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 CDCP1Q9H5V8 836 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 FOXJ2Q9P0K8 574 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 TMEM98Q9Y2Y6 226 aa6.72□□□□□ -1.33
VPS50-212ENST00000476413 FNDC1Q4ZHG4 1894 aaPredicted RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 AGAP5A6NIR3 686 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 MBD3L5A6NJ08 208 aaPredicted RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 A6NLC8 198 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 NARSO43776 548 aaKnown RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 ESRRBO95718 433 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 CYP3A4P08684 503 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 IGHMBP2P38935 993 aaKnown RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 GRIA3P42263 894 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 NR1H2P55055 460 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 VAMP2P63027 116 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 RAE1P78406 368 aaKnown RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 TRPC3Q13507 836 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 PLAC9Q5JTB6 97 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 ZNF569Q5MCW4 686 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 ANKRD16Q6P6B7 361 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 MTHFD1LQ6UB35 978 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 Q6ZPA2 131 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 LCORLQ8N3X6 602 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 GLMPQ8WWB7 406 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 SNX18Q96RF0 628 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 RMI1Q9H9A7 625 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 ADAMTS5Q9UNA0 930 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 RRP7AQ9Y3A4 280 aaKnown RBP6.71□□□□□ -1.34
VPS50-212ENST00000476413 PCDHA10Q9Y5I2 948 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 LMTK3Q96Q04 1460 aa6.71□□□□□ -1.34
VPS50-212ENST00000476413 VWA3AA6NCI4 1184 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 PDE8BO95263 885 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 CD4P01730 458 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 CSF1P09603 554 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 GALNSP34059 522 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 TAS2R50P59544 299 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 TXNL4AP83876 142 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms