RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 EGFLAMQ63HQ2 1017 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 NUDT18Q6ZVK8 323 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 CACNA2D4Q7Z3S7 1137 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 SCUBE3Q8IX30 993 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 SLC4A5Q9BY07 1137 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 TJP2Q9UDY2 1190 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 USP18Q9UMW8 372 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 STARD13Q9Y3M8 1113 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 CKAP5Q14008 2032 aa18.72■□□□□ 0.59
UPF3A-203ENST00000474056 E5RJQ4 531 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 PES1O00541 588 aaKnown RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 WASP42768 502 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 ACADSBP45954 432 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 HARS2P49590 506 aaKnown RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 TCP11X2Q5H9J9 407 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 TRMT11Q7Z4G4 463 aaKnown RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 ENOX1Q8TC92 643 aaKnown RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 STK32AQ8WU08 396 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 GOLGA1Q92805 767 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 FAM149B1Q96BN6 582 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 ACOX2Q99424 681 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 POLMQ9NP87 494 aaPredicted RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 TAB2Q9NYJ8 693 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 CLEC4EQ9ULY5 219 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 GON4LQ3T8J9 2241 aa18.71■□□□□ 0.59
UPF3A-203ENST00000474056 TNRC6BQ9UPQ9 1833 aaKnown RBP18.71■□□□□ 0.59
UPF3A-203ENST00000474056 FOXN3O00409 490 aaPredicted RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 PAPSS1O43252 624 aaPredicted RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 TSPAN3O60637 253 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 CYBBP04839 570 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 NCAM1P13591 858 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 EEF1GP26641 437 aaKnown RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 CLCN1P35523 988 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 ID4P47928 161 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 DNAH14Q0VDD8 3507 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 PDCLQ13371 301 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 PLK5Q496M5 336 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 C11orf57Q6ZUT1 292 aaPredicted RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 PASD1Q8IV76 773 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 GPR161Q8N6U8 529 aaKnown RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 KCNV2Q8TDN2 545 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 DDI1Q8WTU0 396 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 PIWIL1Q96J94 861 aaKnown RBP18.7■□□□□ 0.58
UPF3A-203ENST00000474056 STOML2Q9UJZ1 356 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 NAALADL1Q9UQQ1 740 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 INVSQ9Y283 1065 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 SLC27A6Q9Y2P4 619 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 FHOD1Q9Y613 1164 aa18.7■□□□□ 0.58
UPF3A-203ENST00000474056 TCRBV21S2A2A0A5A6 115 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 GFRA2O00451 464 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 SART1O43290 800 aaKnown RBP18.69■□□□□ 0.58
UPF3A-203ENST00000474056 ALDH1A2O94788 518 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 LATS1O95835 1130 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 IGLV3-27P01718 113 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 NTSR1P30989 418 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 PI4KAP42356 2102 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 TMEM110Q86TL2 294 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 SLC47A2Q86VL8 602 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 WDTC1Q8N5D0 677 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 DQX1Q8TE96 717 aaKnown RBP18.69■□□□□ 0.58
UPF3A-203ENST00000474056 HMGB4Q8WW32 186 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 RMDN1Q96DB5 314 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 ZC3H10Q96K80 434 aaKnown RBP18.69■□□□□ 0.58
UPF3A-203ENST00000474056 LSM14BQ9BX40 385 aaKnown RBP18.69■□□□□ 0.58
UPF3A-203ENST00000474056 DUSP15Q9H1R2 295 aaPredicted RBP18.69■□□□□ 0.58
UPF3A-203ENST00000474056 SEMA4GQ9NTN9 838 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 PCDHGC3Q9UN70 934 aa18.69■□□□□ 0.58
UPF3A-203ENST00000474056 MUC22E2RYF6 1773 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 LRP3O75074 770 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 EPN2O95208 641 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 HOXB2P14652 356 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 HOXD9P28356 352 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 SGSHP51688 502 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 TBX4P57082 545 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 PTK2Q05397 1052 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 RAPGEF1Q13905 1077 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 DRAP1Q14919 205 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 GEN1Q17RS7 908 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 MPPE1Q53F39 396 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 USP39Q53GS9 565 aaKnown RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 KLHDC7AQ5VTJ3 777 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 CDKAL1Q5VV42 579 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 SYPL2Q5VXT5 272 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 NUGGCQ68CJ6 796 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 CHPFQ8IZ52 775 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 C1orf131Q8NDD1 294 aaKnown RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 OLIG1Q8TAK6 271 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 ERLEC1Q96DZ1 483 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 LOXL4Q96JB6 756 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 FCRL2Q96LA5 508 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 CPXM1Q96SM3 734 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 ARRDC1-AS1Q9H2J1 176 aa18.68■□□□□ 0.58
UPF3A-203ENST00000474056 BCCIPQ9P287 314 aaKnown RBP eCLIP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.68■□□□□ 0.58
UPF3A-203ENST00000474056 GOLGA6L7A0A1B0GV03 622 aa18.67■□□□□ 0.58
UPF3A-203ENST00000474056 A0A1W2PQF6 199 aa18.67■□□□□ 0.58
UPF3A-203ENST00000474056 MBD3O95983 291 aa18.67■□□□□ 0.58
UPF3A-203ENST00000474056 BCKDHBP21953 392 aa18.67■□□□□ 0.58
UPF3A-203ENST00000474056 GBP1P32455 592 aa18.67■□□□□ 0.58
UPF3A-203ENST00000474056 RING1Q06587 406 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms