RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PTH2RP49190 550 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 SEC24CP53992 1094 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 EXOSC9Q06265 439 aaKnown RBP4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PPIGQ13427 754 aaKnown RBP eCLIP4.8□□□□□ -1.641e-9■■■■■ 42.5
VPS13A-210ENST00000471439 GRAPQ13588 217 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 SEMA5AQ13591 1074 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 GEN1Q17RS7 908 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 AMOTQ4VCS5 1084 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 RNF220Q5VTB9 566 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PPP4R4Q6NUP7 873 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 SLC44A5Q8NCS7 719 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 GRAPLQ8TC17 118 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PARD3BQ8TEW8 1205 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 MRGPRX1Q96LB2 322 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 TOR3AQ9H497 397 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PCDHAC2Q9Y5I4 1007 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 DNHD1Q96M86 4753 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 MGST3O14880 152 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TEX33O43247 280 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 NTSR2O95665 410 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TIMP1P01033 207 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 CSF2RAP15509 400 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TGM1P22735 817 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 GPTP24298 496 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 FAM193AP78312 1265 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 CREMQ03060 361 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 UBE4AQ14139 1066 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 FGL2Q14314 439 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 HLTFQ14527 1009 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 SAFBQ15424 915 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 CYP2A13Q16696 494 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 PABPC1LQ4VXU2 614 aaKnown RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 PSRC1Q6PGN9 363 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 CCDC174Q6PII3 467 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 OLFML1Q6UWY5 402 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TTC5Q8N0Z6 440 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 IL31RAQ8NI17 732 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 LRTOMTQ8WZ04 291 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 LPAR1Q92633 364 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TNPO1Q92973 898 aaKnown RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 CAVIN3Q969G5 261 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TTC17Q96AE7 1141 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 Q96MF0 132 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 RIPOR3Q96MK2 946 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 NAA15Q9BXJ9 866 aaKnown RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 WDCPQ9H6R7 721 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 VEZTQ9HBM0 779 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 MRPS18AQ9NVS2 196 aaKnown RBP4.79□□□□□ -1.64
VPS13A-210ENST00000471439 FAM30AQ9NZY2 134 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 TICRRQ7Z2Z1 1910 aa4.79□□□□□ -1.64
VPS13A-210ENST00000471439 IBTKQ9P2D0 1353 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 GOLIM4O00461 696 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 FYB1O15117 783 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 PQBP1O60828 265 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 PEX14O75381 377 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 AGFG2O95081 481 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 ARIH2O95376 493 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 NUDT3O95989 172 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 FOSP01100 380 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 HLA-DOAP06340 250 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 CKBP12277 381 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 PIK3CGP48736 1102 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 RHBDL3P58872 404 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 ARHGAP8P85298 464 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 TAP1Q03518 808 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 KHDC1LQ5JSQ8 128 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 DARS2Q6PI48 645 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 FITM2Q8N6M3 262 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 ANKRD13CQ8N6S4 541 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 NSUN7Q8NE18 718 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 TMIEQ8NEW7 156 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 IL17RDQ8NFM7 739 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 GDPD5Q8WTR4 605 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 MTFMTQ96DP5 389 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 FAM167AQ96KS9 214 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 PACSIN1Q9BY11 444 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 REXO4Q9GZR2 422 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 TESQ9UGI8 421 aaKnown RBP4.78□□□□□ -1.64
VPS13A-210ENST00000471439 KCNE5Q9UJ90 142 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 CDYLQ9Y232 598 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 NOX1Q9Y5S8 564 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 R4GN57 208 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 MYO7AQ13402 2215 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 CELSR3Q9NYQ7 3312 aa4.78□□□□□ -1.64
VPS13A-210ENST00000471439 A0A1W2PPL8 197 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 KBTBD13C9JR72 458 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 TBX3O15119 743 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 RNMTO43148 476 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 PHGDHO43175 533 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 SLC43A1O75387 559 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 ERN1O75460 977 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 HAUS5O94927 633 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 PRB1P04280 392 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 FTH1P19P0C7X4 201 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 HKR1P10072 659 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 FDXRP22570 491 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 SOX8P57073 446 aa4.77□□□□□ -1.65
VPS13A-210ENST00000471439 PSMC1P62191 440 aaKnown RBP4.77□□□□□ -1.65
VPS13A-210ENST00000471439 MC2RQ01718 297 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms