RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 CREB3O43889 395 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TMEM191BP0C7N4 346 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SMIM10L2AP0DMW4 78 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SMIM10L2BP0DMW5 78 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 MYL2P10916 166 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 KRT10P13645 584 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SSTR1P30872 391 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PEX3P56589 373 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 MRPS9P82933 396 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TFDP3Q5H9I0 405 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 HP1BP3Q5SSJ5 553 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 IZUMO2Q6UXV1 221 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 MARK2Q7KZI7 788 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ST13P4Q8IZP2 240 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TMEM161BQ8NDZ6 487 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PIP4K2CQ8TBX8 421 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PRR11Q96HE9 360 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SAMD11Q96NU1 681 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NECAB3Q96P71 396 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NDNQ99608 321 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 C11orf70Q9BRQ4 267 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NTPCRQ9BSD7 190 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NMUR2Q9GZQ4 415 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 EPB41L1Q9H4G0 881 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TUT1Q9H6E5 874 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TAGLN3Q9UI15 199 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SORCS3Q9UPU3 1222 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 CNTN6Q9UQ52 1028 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 USTQ9Y2C2 406 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PPME1Q9Y570 386 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 DHX15O43143 795 aaKnown RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 SPAG6O75602 509 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 AMHP03971 560 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 KRT1P04264 644 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 UBTFL6P0CB48 400 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ACO1P21399 889 aaKnown RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 GARTP22102 1010 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ADAM17P78536 824 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 CDC16Q13042 620 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 WDR44Q5JSH3 913 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 FAM26DQ5JW98 314 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 LLGL2Q6P1M3 1020 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 RIPOR1Q6ZS17 1223 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 CAPN12Q6ZSI9 719 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 TMCO2Q7Z6W1 182 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ANKMY2Q8IV38 441 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 PALM2Q8IXS6 379 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 C4orf19Q8IY42 314 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ULK2Q8IYT8 1036 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 GPD1LQ8N335 351 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 NME8Q8N427 588 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 TTC13Q8NBP0 860 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 RAB3IL1Q8TBN0 382 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 GDPD5Q8WTR4 605 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 SPIRE2Q8WWL2 714 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 CPT1BQ92523 772 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 APBB2Q92870 758 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ATP6V0A1Q93050 837 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 MRRFQ96E11 262 aaKnown RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 TUBGCP5Q96RT8 1024 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 GPR20Q99678 358 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 TOPORSQ9NS56 1045 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-205ENST00000469550 ANKEF1Q9NU02 776 aa9.93□□□□□ -0.82
HDAC3-205ENST00000469550 BDP1A6H8Y1 2624 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SMIM31A0A1B0GVY4 71 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SPECC1L-ADORA2AF8WAN1 911 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SGK1O00141 431 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 BUD23O43709 281 aaKnown RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ATF7P17544 494 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 YWHABP31946 246 aaKnown RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 THPOP40225 353 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 CDKN2BP42772 138 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 CLCN2P51788 898 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 GRM2Q14416 872 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 EFTUD2Q15029 972 aaKnown RBP eCLIP9.92□□□□□ -0.822e-7■■■■■ 36.7
HDAC3-205ENST00000469550 FNBP1LQ5T0N5 605 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 KAZNQ674X7 775 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SMYD5Q6GMV2 418 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.92□□□□□ -0.823e-7■□□□□ 8.1
HDAC3-205ENST00000469550 PDIK1LQ8N165 341 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 RBM15BQ8NDT2 890 aaKnown RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 FBXO36Q8NEA4 188 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 DBF4BQ8NFT6 615 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SLC44A1Q8WWI5 657 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SEPT8Q92599 483 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PANX3Q96QZ0 392 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 WWP1Q9H0M0 922 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 IRAK4Q9NWZ3 460 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SLC7A8Q9UHI5 535 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ARIH1Q9Y4X5 557 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 FAM237BA0A1B0GVD1 139 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 A0A1B0GVG6 124 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PI4K2BG5E9Z4 385 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 AP1G1O43747 822 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 CALCAP01258 141 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ZCCHC18P0CG32 403 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ITGB5P18084 799 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 BGNP21810 368 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms